DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:89..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL7B_HUMAN (Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.860e-22
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 3
Query:   87 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            I+ ++ D G+   K G+AG+  P     S VG+        G  +K   VG E  +    L L  P++HGIV +WD ++ IW + F   +++ PEEH VL+++ PL+P +NREK  ++MFETF  PAM+V  Q++
Sbjct:   49 IKAVIIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKWTLVGHELLNTEAPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNREKYAELMFETFGIPAMHVTSQSL 183          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_PSEMZ (Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3
Query:  279 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 413
            YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
Sbjct:    1 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 45          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTL9_MOUSE (Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +V D GTG  K GFAG   P     +I+G            + + ++G+ A+S+  +  +K PI +GIV +W+  E IW H   ++L+VA  EHP+L ++ P +P  NREK+ ++ FE+ ++PA+YVA Q+V
Sbjct:   51 VVIDMGTGTCKVGFAGQSQPTYTVATILGCQPKKQATKDQSELETFIGEAARSRPELRLVK-PIRNGIVVDWEAAELIWRHILEHDLQVATHEHPLLFSDPPFSPATNREKLVEVAFESLHSPALYVASQSV 181          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL7B_MACFA (Actin-like protein 7B OS=Macaca fascicularis GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   87 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            I+ +V D G+   K G+AG+  P     S VG+        G  +K   VG E  +    L L  P++HGIV +WD ++ IW + F   +++ PEEH VL+++ PL+P +NREK  ++MF TF  PAM+V  Q++
Sbjct:   49 IKAVVIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKGTLVGHELLNTETPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNREKYAELMFGTFGIPAMHVTSQSL 183          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTL9_HUMAN (Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21
Identity = 52/132 (39.39%), Postives = 75/132 (56.82%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +V D GTG  K GFAG  +P     +I+G         G      ++G+ A+     LTL  P+  GIV +WD  E IW H   ++LRVA  +HP+L ++ P +P  NREK+ ++ FE+  +PAMYVA Q+V
Sbjct:   52 VVIDMGTGTCKVGFAGQASPTYTVATILGCQPKKPATSGQSGLQTFIGEAARVLPE-LTLVQPLRSGIVVDWDAAELIWRHLLEHDLRVATHDHPLLFSDPPFSPATNREKLVEVAFESLRSPAMYVASQSV 182          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   69 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------------MGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 428
            M  G+++  +V D G+   KAG+AG+DAP+AVFPS+VG     G+ +                 G++  Y G +A + +R  + +  P + GIV++WD ++ +W H F N L + P EHP+LL E PLN +  REK
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.918e-18
Identity = 50/146 (34.25%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   78 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            G+++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N PA ++   AV
Sbjct:    8 GDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAV 153          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.918e-18
Identity = 50/146 (34.25%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   78 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            G+++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N PA ++   AV
Sbjct:    8 GDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAV 153          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.918e-18
Identity = 50/146 (34.25%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   78 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            G+++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N PA ++   AV
Sbjct:    8 GDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAV 153          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 50/146 (34.25%), Postives = 83/146 (56.85%), Query Frame = 3
Query:   78 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            G+++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N PA ++   AV
Sbjct:    8 GDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGDKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAV 153          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACL7B_HUMAN2.860e-2237.78Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE... [more]
ACT1_PSEMZ6.372e-22100.00Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 S... [more]
ACTL9_MOUSE1.087e-2137.12Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2... [more]
ACL7B_MACFA1.087e-2137.78Actin-like protein 7B OS=Macaca fascicularis GN=AC... [more]
ACTL9_HUMAN1.419e-2139.39Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2... [more]
ARP4A_ARATH1.017e-1936.76Actin-related protein 4A OS=Arabidopsis thaliana G... [more]
ACL6B_RAT1.918e-1834.25Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE1.918e-1834.25Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_BOVIN1.918e-1834.25Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACL6B_HUMAN3.272e-1834.25Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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