DC900355
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.182e-15 Identity = 39/121 (32.23%), Postives = 76/121 (62.81%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 +++ + I+R+ +T++DG +++ ++LT I+GIG A +C+K +D + G LS +++ L V N + P WFLNR+KD + GK ++ L + + D++ +KK+++ +G+RHS Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHEL-APAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHS 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.849e-15 Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 E+ ++ +RV NT++DG + + ALT IKGIG + + A VD + G+L + + V + ++PDW +NRQKD G+ ++ L M DD+ R++K+R++RG+RH Sbjct: 4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRH 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_HALWD (30S ribosomal protein S13P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps13p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14 Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 ++D Q+ +R+ T++DG + + +LT +KGIG+R A I+ A VD + G L E+D++ V N IP W NR++D+ G L+ K R D+ R+K I +++G+RH Sbjct: 15 DDDLQYFVRIGTTDLDGTKAVERSLTDMKGIGKRTARIITDVASVDRHATFGLLEEDEIDSITDAVEN-LDDHIPGWMTNRREDFFSGDTDHKTGADLEEKRRHDVNRMKMIDSYKGVRH 133
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRCJ (30S ribosomal protein S13P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps13p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14 Identity = 37/120 (30.83%), Postives = 73/120 (60.83%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 ++ + I+R+ +T++DG + + +AL I+GIG A +C+K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RHS Sbjct: 3 QEIRAIVRIGDTDLDGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHS 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METLZ (30S ribosomal protein S13P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps13p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.374e-14 Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 2 Query: 44 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL-MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +V + ++ +R++NT++DG Q + ALT IKGIG A I+ ++A VD G L ++ + V A P +P W +NR D G+ + + L + DD+ +KK+R +RG+RH Sbjct: 1 MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPA--SVPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRH 122
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRAE (30S ribosomal protein S13P OS=Pyrobaculum aerophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 9.166e-14 Identity = 37/121 (30.58%), Postives = 74/121 (61.16%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 +++ + I+R+ +T++DG +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RHS Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAILGALPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGVRHS 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRAR (30S ribosomal protein S13P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps13p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13 Identity = 37/121 (30.58%), Postives = 74/121 (61.16%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 +++ + I+RV +T+++G +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RHS Sbjct: 2 SQELRAIVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAVRNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHS 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_CENSY (30S ribosomal protein S13P OS=Cenarchaeum symbiosum GN=rps13p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.667e-13 Identity = 34/126 (26.98%), Postives = 72/126 (57.14%), Query Frame = 2 Query: 35 KMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 K ++ ++++HI+R+L ++ G++K + L I+GIG A + +D N G L+ ++ ++ ++ +P P WFLNR+KD + G+ + ++ ++ +R+D+ER + + +G RH Sbjct: 42 KRPRLSAQEYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIEKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRH 167
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_HALSA (30S ribosomal protein S13P OS=Halobacterium salinarium GN=rps13p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13 Identity = 36/120 (30.00%), Postives = 67/120 (55.83%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +ED Q+ +R+ T++DG + + AL + G+GRR+A IV +A VD G L ++++ V + + P W NRQ D+ G+ + +++ D+ R++ IR+++G+RH Sbjct: 10 DEDIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESVTDAVDSFTE-HAPAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRH 128
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_NANEQ (30S ribosomal protein S13P OS=Nanoarchaeum equitans GN=rps13p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12 Identity = 35/114 (30.70%), Postives = 61/114 (53.51%), Query Frame = 2 Query: 71 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 I+ + + ++DG + I L + G+ A+ VC +D ++ G LS EL+ L + NP ++ IP W NR++D + GK +V N + + D++R +I + RG RH Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRH 126 The following BLAST results are available for this feature:
BLAST of DC900355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900355 ID=DC900355; Name=DC900355; organism=Citrus sinensis; type=EST; length=455bpback to top |