DC900350

Overview
NameDC900350
Unique NameDC900350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RL25_YEAST (60S ribosomal protein L25 OS=Saccharomyces cerevisiae GN=RPL25 PE=1 SV=4)

HSP 1 Score: 138.272 bits (347), Expect = 3.831e-32
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  138 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            P  +A    KAV  G   KKA K+RTS TF  PKTLK  R PKY   + P  N+LD Y++++ P+T+E+AMKK+ED N LVF                 +Y++   KVNTL+RP+GTKKAYVRLT D DALD+AN+IG I
Sbjct:    3 PSAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RL25_KLULA (60S ribosomal protein L25 OS=Kluyveromyces lactis GN=RPL25 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.831e-32
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = 3
Query:  138 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            P  +A    KAV  G   KKA K+RTS +F  PKTLK  R+PKY   + P  N+LD Y++++ P+T+E+AMKK+ED NTLVF                 +Y++    VNTL+RP+GTKKAYVRLT D DALD+AN+IG I
Sbjct:    3 PSTKATAAKKAVVKGTNGKKALKVRTSASFRLPKTLKLARSPKYATKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKAYVRLTADFDALDIANRIGYI 142          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: R23A1_CAEEL (60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.535e-32
Identity = 72/137 (52.55%), Postives = 92/137 (67.15%), Query Frame = 3
Query:  147 QALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            +AL   K V  G+     +++RTSV F RP TLK  R  ++PR SAP  +K+DH++I+++PLTTESAMKKIE++NTLVF                 +Y++QA KVNTLI P   KKAYVRLT D DALDVANKIG+I
Sbjct:   11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RL25_PICJA (60S ribosomal protein L25 OS=Pichia jadinii GN=RPL25 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  138 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            P  +A    KAV  G    KA K+RTS TF  PKTLK  R PKY R + P   +LD+Y+++  P+ +E+AMKK+ED NTLVF                 +Y++    VNTLIRP+GTKKAYVRLT D DALD+ANKIG I
Sbjct:    3 PSTKAASAKKAVVKGSNGSKALKVRTSTTFRLPKTLKLTRAPKYARKAVPHYQRLDNYKVIVAPIASETAMKKVEDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRPNGTKKAYVRLTADHDALDIANKIGYI 142          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RL25B_SCHPO (60S ribosomal protein L25-B OS=Schizosaccharomyces pombe GN=rpl25b PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  165 KAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            K V+ G   K A+K+RTS TF RPKTL+  R PKY R S P  ++LD Y+I+  P+ +ESAMKKIED+NTLVF                 +Y + A K+NTLIRP+GTKKA+V+L+ D+DALDVAN+IG +
Sbjct:   11 KTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RL25A_SCHPO (60S ribosomal protein L25-A OS=Schizosaccharomyces pombe GN=rpl25a PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = 3
Query:  165 KAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            K V+ G   K AKK+RTS TF RPKTL+  R PKY R S     +LD Y+I+  P+ +ESAMKKIED+NTLVF                 +Y ++  K+NTLIRP+GTKKA+V+L+ D+DALDVAN+IG +
Sbjct:   11 KTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: R23A2_CAEEL (60S ribosomal protein L23a 2 OS=Caenorhabditis elegans GN=rpl-25.2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 76/152 (50.00%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  102 MAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            MAP   +  KA      ++  KAV  G      K +RTSV F RPKTL   R P+Y R SAP R+KLD + ++K P TTES+MKKIED+NTLVF                 +Y+++A KVNTLI P   KKAYVRL  D DALDVANKIG I
Sbjct:    1 MAPSSNKVGKA------IQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVANKIGFI 146          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RL23A_DICDI (60S ribosomal protein L23a OS=Dictyostelium discoideum GN=rpl23a PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.833e-29
Identity = 66/138 (47.83%), Postives = 86/138 (62.32%), Query Frame = 3
Query:  144 VQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            ++A   A AVK G + K  +K+RTSV F RP TL   + P YPR S     K+D ++ILK PLTTESA +KIE +NT+ F                 MYD++ K+VNTLI P G KKA+V L+P+ +A DVANKIG+I
Sbjct:   32 IKAKAAASAVKKGVSNKSTRKVRTSVIFRRPVTLNNPKKPAYPRRSVNKITKMDQFRILKAPLTTESATQKIEGSNTITFMVDMFANKSQVADAVAKMYDVKVKRVNTLITPRGEKKAFVTLSPEFEAADVANKIGLI 169          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RL23A_TRYBB (60S ribosomal protein L23a OS=Trypanosoma brucei brucei GN=RPL23A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = 3
Query:   93 RRTMAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 557
            ++  AP    +KK   K      AK  K  +  K+  K  T   F RP T ++    K     +  +NK D ++I++YPLTT+ AMKKIE+NNTL F                 +Y ++  KVNTLIRPDG KKAY+RL+   DALD ANK+G++
Sbjct:   12 KKNSAPKSAVSKKVAKKGAPAAAAKPTKVVKVTKR--KAYTRPQFRRPHTYRRPATVKPSSNVSAIKNKWDAFRIIRYPLTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPDGLKKAYIRLSASYDALDTANKMGLV 164          
BLAST of DC900350 vs. ExPASy Swiss-Prot
Match: RK23_SPIOL (50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=RPL23 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  231 RPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGI 554
            +PKT KK +  KYPR        LD YQIL+ P+ TE+A+K I D N+L+F                  + ++ +KVNTLIRPDGTKKAY+ L  + +A ++A KIGI
Sbjct:   92 QPKTSKKAKKLKYPR------RILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 193          
The following BLAST results are available for this feature:
BLAST of DC900350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL25_YEAST3.831e-3250.0060S ribosomal protein L25 OS=Saccharomyces cerevis... [more]
RL25_KLULA3.831e-3249.2960S ribosomal protein L25 OS=Kluyveromyces lactis ... [more]
R23A1_CAEEL8.535e-3252.5560S ribosomal protein L23a 1 OS=Caenorhabditis ele... [more]
RL25_PICJA1.456e-3150.0060S ribosomal protein L25 OS=Pichia jadinii GN=RPL... [more]
RL25B_SCHPO4.236e-3151.9160S ribosomal protein L25-B OS=Schizosaccharomyces... [more]
RL25A_SCHPO4.684e-3051.1560S ribosomal protein L25-A OS=Schizosaccharomyces... [more]
R23A2_CAEEL4.684e-3050.0060S ribosomal protein L23a 2 OS=Caenorhabditis ele... [more]
RL23A_DICDI8.833e-2947.8360S ribosomal protein L23a OS=Dictyostelium discoi... [more]
RL23A_TRYBB1.906e-2339.3560S ribosomal protein L23a OS=Trypanosoma brucei b... [more]
RK23_SPIOL1.728e-1643.5250S ribosomal protein L23, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionDC900350 VSS Citrus sinensis cDNA clone VS28909 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900350 ID=DC900350; Name=DC900350; organism=Citrus sinensis; type=EST; length=697bp
CTTTTTTATAAACCCTAGTTTCCTCTTCACAAAGACCAAATCCCAGAGCC
GGCTCCTCTACTGCCCACTTACAGGTAAGTTCTCATCATCGCCGGCGAAC
AATGGCTCCTCCAAAAGGTGAGACAAAAAAGGCTGATCCAAAGGTTCAGG
CCTTGAAGACTGCGAAAGCAGTGAAGTCTGGCCGTACCTTTAAGAAGGCC
AAGAAGATCCGGACTTCAGTTACATTTCACCGTCCAAAGACATTGAAGAA
GGACCGGAATCCCAAGTACCCTCGCATCAGTGCTCCACCTAGGAACAAGC
TTGACCATTATCAGATTCTCAAGTACCCACTCACCACTGAATCAGCAATG
AAGAAAATTGAAGACAACAATACTCTGGTTTTCATTGTTGACATACGGGC
TGATAAGAAAAAGATAAAGGATGCAGTTAAGAAGATGTATGATATCCAGG
CTAAGAAAGTGAATACCTTGATCAGGCCCGATGGCACAAAGAAGGCGTAT
GTCAGGTTGACACCAGACTCTGATGCTTTGGACGTAGCAAACAAGATTGG
AATCATTTAAACAATTGATCTTTCATTCACATTTTTGTGTATTTTTTAAT
CCAAAAAGTTAGTTATGTTAAGACCTCAAACAAAGATTTGCAAATTTGTT
CCTGTTAACATTTGTTACTGCTGATTAATATTTTCCTATTTTGTGTT
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