DC900349
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 1.374e-17 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 2.343e-17 Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 244 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVL 146
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.060e-17 Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 2 Query: 8 NKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 NK++CP +N+D LWS+V +DV+A+ + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A++KIK GGA LTA Sbjct: 66 NKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.997e-17 Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = 2 Query: 8 NKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 NK++CP +N+D LWS+V +D++A+ + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A++KIK GGA LTA Sbjct: 66 NKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4) HSP 1 Score: 88.1965 bits (217), Expect = 8.903e-17 Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 RN+ CP VN+DK W++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 8.903e-17 Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 2 Query: 8 NKFHCPIVNIDKLWSMVPQDV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 NK++CP +N+D LWS+V +DV K + + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A++KIK GGA LTA Sbjct: 66 NKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 1.286e-15 Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 +N+ CP +N+DKLW++V + + AK + P+ID GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 KNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: R27A1_ARATH (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana GN=RPL27AA PE=5 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.193e-15 Identity = 48/82 (58.54%), Postives = 51/82 (62.20%), Query Frame = 2 Query: 2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 247 LRNKF+C IVN+DKLWSMV LGKG LPEN+PVVVKAKLVS T EKKIKEAG AVVLT Sbjct: 45 LRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 3.741e-15 Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 2 Query: 14 FHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 F P++N+DKLW+++P+D + + ASK+ P+ID GY K+LGKG +P N PV+VKA+ VSK AE+KI+ AGG V L A Sbjct: 68 FWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
BLAST of DC900349 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.886e-15 Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 2 Query: 2 LRNKFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 LRN PI+NI+KLW++VP + + K A+ + P+ID+ GY K+LGKG LP+ P+VV+A+ VS AE+KIKEAGG + L A Sbjct: 64 LRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRARYVSAEAERKIKEAGGVIELVA 149 The following BLAST results are available for this feature:
BLAST of DC900349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900349 ID=DC900349; Name=DC900349; organism=Citrus sinensis; type=EST; length=1064bpback to top |