DC900345

Overview
NameDC900345
Unique NameDC900345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5659 contig Csv1_Contig5659:1..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SRK2D_ARATH (Serine/threonine-protein kinase SRK2D OS=Arabidopsis thaliana GN=SRK2D PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 1
Query:   16 YDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKK----IFKADFKSPP--WFSTSAKKLISRILDPNPVTRITMAEVIENEWFKK------------GYKPPSFEQPNIDLDDVDSIFNES 330
            YDG  AD+WSCGV LYV++ G  PFE+      Y+K    I    +  P     S   + LISRI   +P TRIT+ E+  ++WF K            G +    EQP   LD +  I +E+
Sbjct:  195 YDGKLADVWSCGVTLYVMLVGAYPFEDPQEPRDYRKTIQRILSVTYSIPEDLHLSPECRHLISRIFVADPATRITIPEITSDKWFLKNLPGDLMDENRMGSQFQEPEQPMQSLDTIMQIISEA 317          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SMK2B_MOUSE (Sperm motility kinase 2B OS=Mus musculus GN=Smok2b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = 1
Query:    7 NKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKG---YKPPSFEQ----PNIDL------------DDVDSI----FNESMDSRNLV---VERREEGPVAPLTMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKR 498
            ++ YDG K D+W+ GV+LY ++ G +PF+ +++  L ++I    +  P   S   + LIS ++  NP  R T+AEV+ + W  +G   +  P  EQ    PN  +            D  DS+    FNE+M S  L+   + +  + P+    MN     S +   +L       +GL +RET  TS R
Sbjct:  175 SRPYDGPKIDVWTLGVVLYFMVTGKVPFDAASIQKLVRQILAGKYFVPSRLSVELRDLISLLMTANPKLRPTVAEVMVHPWVTEGSGVFPDPCEEQMPLKPNPAIVKAMGYIGFQAQDIEDSLRQRKFNETMASYCLLKKQILKECDRPIRAQPMNP----SVTPFPSLVDTSTFHLGLRRRETEPTSLR 360          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2B_RAT (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Rattus norvegicus GN=Camk2b PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDV----------DSIFNESMDSRNLVVERREEGPVAPLTMNAFELISTSQGL--NLSSLFEKQMGLVKRETRFT 489
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT  E +++ W  +     S       ++ +           +I    + +RN  V R+     AP TM+      T+ GL     SL  K+   VK +T  T
Sbjct:  192 GKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQI-KAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKLKGAILTTMLATRNFSVGRQ---TTAPATMST-AASGTTMGLVEQAKSLLNKKADGVKPQTNST 359          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2B_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Mus musculus GN=Camk2b PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDV----------DSIFNESMDSRNLVVERREEGPVAPLTMNAFELISTSQGL--NLSSLFEKQMGLVKRETRFT 489
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT  E +++ W  +     S       ++ +           +I    + +RN  V R+     AP TM+      T+ GL     SL  K+   VK +T  T
Sbjct:  192 GKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQI-KAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKLKGAILTTMLATRNFSVGRQ---TTAPATMST-AASGTTMGLVEQAKSLLNKKADGVKPQTNST 359          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2B_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Homo sapiens GN=CAMK2B PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDV----------DSIFNESMDSRNLVVERREEGPVAPLTMNAFELISTSQGL--NLSSLFEKQMGLVKRETRFT 489
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT  E +++ W  +     S       ++ +           +I    + +RN  V R+     AP TM+      T+ GL     SL  K+   VK +T  T
Sbjct:  192 GKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQI-KAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKLKGAILTTMLATRNFSVGRQ---TTAPATMST-AASGTTMGLVEQAKSLLNKKADGVKPQTNST 359          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: YP141_YEAST (Putative serine/threonine-protein kinase YPL141C OS=Saccharomyces cerevisiae GN=YPL141C PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.978e-11
Identity = 52/177 (29.38%), Postives = 81/177 (45.76%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEE-------SNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDVDSIFNESMDSRNLVVERREEGPVAPLTMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKRPVNE 510
            I+ + Y+  KAD+WSCGVILY ++AGYLP+++       S++  LY  I     K P +     + L+ R+L  +P  RI + ++ ++EW K     P     +I  D+ D + N +     L   RR  G             S+    +L S  +K+  LV   T  T   P  E
Sbjct:  223 ISAEPYEARKADIWSCGVILYAILAGYLPWDDDPNNPEGSDIGRLYNYINSTPLKFPDYILPIPRDLLRRMLVSDPKKRINLKQIKKHEWLK-----PHSSFLSITPDEWDKL-NNTQSVFRLAKPRRRYGSRPQ---------SSCSTSSLGSRSDKRDSLVIDSTLITFPAPPQE 384          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SRK2G_ARATH (Serine/threonine-protein kinase SRK2G OS=Arabidopsis thaliana GN=SRK2G PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.978e-11
Identity = 42/133 (31.58%), Postives = 61/133 (45.86%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEE----SNLMALYKKIFKADFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDVDSIFN--ESMDSRNLVVERREEGP 375
            ++ + YDG  AD+WSCGV LYV++ G  PFE+     N     ++I    +K P +   S   K L+SRI   N   RIT+ E+  + W+ K       E         D+ F+     D   +V E R   P
Sbjct:  171 LSRREYDGKHADVWSCGVTLYVMLVGAYPFEDPNDPKNFRKTIQRIMAVQYKIPDYVHISQECKHLLSRIFVTNSAKRITLKEIKNHPWYLKNLPKELLESAQAAYYKRDTSFSLQSVEDIMKIVGEARNPAP 303          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SMK3_MOUSE (Sperm motility kinase 3 OS=Mus musculus GN=Smok3a PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.978e-11
Identity = 56/214 (26.17%), Postives = 96/214 (44.86%), Query Frame = 1
Query:   16 YDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKG---YKPPSFEQPNIDLDDVDSIFNESMDSRNLVVERREEGPVAPLTMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKRPVNEII----SKIEEAASPLGFDVKKN---------NFKLKLQGEKTGRK 609
            YDG K D+W+ GV+LY ++ G +PF+  ++  L K+I    +  P   S   + L+S ++  NP  R T+AEV+ + W  +G   +  P  EQ  +  D              +V      G  A    ++      +Q +    L +KQ  ++K   R T  RPVN  +    S ++ A + LG   ++N         N ++ + G+ T +K
Sbjct:  198 YDGPKIDVWTLGVVLYFMVTGKIPFDACSIKKLVKRILAGKYSIPSRLSAELQDLLSLLMTANPKLRPTVAEVMVHPWVTEGSGVFPDPCEEQTPLKPDPA------------IVKAMGHIGFQAQDIEDSLRQRKFNQTMASYCLLKKQ--ILKECDRPTRARPVNPSVTPFPSLVDTATTRLGLRRRENEPTCPWSSANRQVSVCGKSTSKK 397          
The following BLAST results are available for this feature:
BLAST of DC900345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
SRK2D_ARATH6.108e-1135.77Serine/threonine-protein kinase SRK2D OS=Arabidops... [more]
SMK2B_MOUSE6.108e-1129.47Sperm motility kinase 2B OS=Mus musculus GN=Smok2b... [more]
KCC2B_RAT6.108e-1132.37Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2B_MOUSE6.108e-1132.37Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2B_HUMAN6.108e-1132.37Calcium/calmodulin-dependent protein kinase type I... [more]
YP141_YEAST7.978e-1129.38Putative serine/threonine-protein kinase YPL141C O... [more]
SRK2G_ARATH7.978e-1131.58Serine/threonine-protein kinase SRK2G OS=Arabidops... [more]
SMK3_MOUSE7.978e-1126.17Sperm motility kinase 3 OS=Mus musculus GN=Smok3a ... [more]

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Properties
Property NameValue
Genbank descriptionDC900345 VSS Citrus sinensis cDNA clone VS28902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900345 ID=DC900345; Name=DC900345; organism=Citrus sinensis; type=EST; length=1136bp
ATTAATAATAAAGGCTACGATGGAGCTAAGGCAGATCTCTGGTCTTGCGG
TGTGATTCTTTATGTCTTAATGGCTGGTTACTTGCCTTTTGAAGAATCCA
ATCTGATGGCTTTATATAAGAAGATATTTAAGGCTGACTTCAAGAGTCCT
CCATGGTTCTCGACAAGTGCAAAGAAACTGATCTCAAGAATTTTGGACCC
TAATCCTGTGACACGAATAACGATGGCTGAGGTTATTGAGAATGAGTGGT
TTAAGAAGGGATATAAGCCACCTAGTTTTGAACAACCTAATATTGATCTT
GATGATGTGGATTCTATCTTTAATGAATCGATGGATTCTCGAAACCTTGT
TGTGGAGAGGCGAGAAGAAGGCCCTGTTGCACCTCTCACTATGAATGCGT
TTGAGTTGATCTCCACATCTCAGGGACTCAACCTCAGTTCCCTTTTCGAA
AAGCAAATGGGACTTGTGAAACGAGAAACAAGATTTACATCCAAACGTCC
TGTTAACGAAATTATATCGAAAATTGAGGAAGCTGCATCGCCTTTGGGTT
TTGATGTGAAGAAAAATAATTTCAAGTTGAAGCTTCAAGGGGAAAAAACT
GGACGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAGGTGGCCCC
TTCACTTTACATGGTTGAGCTTCGAAAATCTGGAGGAGATACCTTAGAAT
TTCACAAGTTTTACAAAAACCTTTCGACTGGGCTGAAAGATGTTGTTTGG
AAATCAGGAGATGAAACAATTGTTGAAGGATCTGCAGTCGCTGGTGGCGC
AGGGTCTCAATAGCGGATTTCCTTTCATGACTTGCACTGCTGAATATCTC
CAGCAAATTATATATTGCTTTTGCACCATTGTATCTCAGCTTTGTATTTT
ATCCTCTAGGCCATGTGTTTCCTTCATTTGTGATTCAGAACTCACTTCTC
GTGTACCTTGGTTTGGCTTTTGTGTGGTTTCAGACTTCCAGATGTATCAT
CTCAACGGATATTGAACATAGTCAATTACCTGCAAATTATCAAAAAGAGT
CTCAGTCCACTGTCGTTTTCATTTTGTTTGTTTTTAGTGACTTGTCTATG
GACCAGAAAATTCAATAAAAAGAATATATTGTAAAA
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