DC900345

Overview
NameDC900345
Unique NameDC900345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5659 contig Csv1_Contig5659:1..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KIN10_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 9.106e-15
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKK------GYKPPSFEQ--PNIDLDDVDSIFNESMDSRNLVVERR 363
            I+ K Y G + D+WSCGVILY L+ G LPF++ N+  L+KKI    +  P   S  A+ LI R+L  +P+ R+T+ E+ ++ WF+          PP   Q    ID + +  + N   D  +L+   R
Sbjct:  211 ISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRVTIPEIRQHPWFQAHLPRYLAVPPPDTVQQAKKIDEEILQEVINMGFDRNHLIESLR 339          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: MARK1_RAT (Serine/threonine-protein kinase MARK1 OS=Rattus norvegicus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.189e-14
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   10 KGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPS---FEQPNIDLDDVDSI 318
            K YDG + D+WS GVILY L++G LPF+  NL  L +++ +  ++ P + ST  + L+ ++L  NP+ R ++ +++++ W   G++      + +P +DL+D   I
Sbjct:  231 KKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCENLLKKLLVLNPIKRGSLEQIMKDRWMNVGHEEEELKPYSEPELDLNDAKRI 336          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: MARK1_MOUSE (Serine/threonine-protein kinase MARK1 OS=Mus musculus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.189e-14
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   10 KGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPS---FEQPNIDLDDVDSI 318
            K YDG + D+WS GVILY L++G LPF+  NL  L +++ +  ++ P + ST  + L+ ++L  NP+ R ++ +++++ W   G++      + +P +DL+D   I
Sbjct:  231 KKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCENLLKKLLVLNPIKRGSLEQIMKDRWMNVGHEEEELKPYSEPELDLNDAKRI 336          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SNF1_CANGA (Carbon catabolite-derepressing protein kinase OS=Candida glabrata GN=SNF1 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.553e-14
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFK 255
            I+ K Y G + D+WSCGVILYV++   LPF++ ++  L+K I    +  P + S  A  LI R+L  NP+ RI++ E++++EWFK
Sbjct:  207 ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGASDLIKRMLIVNPLNRISIHEIMQDEWFK 291          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KIN1_SCHPO (Protein kinase kin1 OS=Schizosaccharomyces pombe GN=kin1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.029e-14
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPP 273
            +N + Y G + D+WS G++LYVL+ G +PF++ N+ AL+ KI K   + P + S+  K L+SR+L  +P+ R T+ EV+ + W  + Y+ P
Sbjct:  312 LNAQPYIGPEVDVWSFGIVLYVLVCGKVPFDDQNMSALHAKIKKGTVEYPSYLSSDCKGLLSRMLVTDPLKRATLEEVLNHPWMIRNYEGP 402          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: AAPK2_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Pongo abelii GN=PRKAA2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.029e-14
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSF---EQPNIDLDDVD 312
            I+ + Y G + D+WSCGVILY L+ G LPF++ ++  L+KKI    F  P + + S   L+  +L  +P+ R T+ ++ E+EWFK+    PS+   E P+ D + +D
Sbjct:  185 ISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDL--PSYLFPEDPSYDANVID 289          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: AAPK2_PIG (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Sus scrofa GN=PRKAA2 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.029e-14
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSF---EQPNIDLDDVD 312
            I+ + Y G + D+WSCGVILY L+ G LPF++ ++  L+KKI    F  P + + S   L+  +L  +P+ R T+ ++ E+EWFK+    PS+   E P+ D + +D
Sbjct:  185 ISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDL--PSYLFPEDPSYDANVID 289          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: AAPK2_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Homo sapiens GN=PRKAA2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.029e-14
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSF---EQPNIDLDDVD 312
            I+ + Y G + D+WSCGVILY L+ G LPF++ ++  L+KKI    F  P + + S   L+  +L  +P+ R T+ ++ E+EWFK+    PS+   E P+ D + +D
Sbjct:  185 ISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDL--PSYLFPEDPSYDANVID 289          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: AMPKA_DICDI (5'-AMP-activated serine/threonine-protein kinase catalytic subunit alpha OS=Dictyostelium discoideum GN=snfA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.650e-14
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWF-----KKGYKPPSFEQPNIDLDDVDSIFNE------SMDSRNLVVERREEGPVAPLTMNAFELISTSQG 426
            I+ K Y G + D+WSCGVILY  +   LPF++ ++  L+KKI +  F  P + S S   LI ++L  +PV RIT+ E+  + WF     K    P +F   +I   + +SI NE       +D   ++ E ++ G V  L ++   L+ + +G
Sbjct:  201 ISGKLYAGPEVDVWSCGVILYAFLCAKLPFDDESIPMLFKKIREGVFSIPDFVSPSCADLIKKMLVVDPVKRITIHEIRNHPWFQVKLPKYLSSPHTFLSKSIQTIN-NSILNEMVQVYAPIDRERIIEELQKSGEVNDLIVSYHLLVDSKRG 352          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: AAPK2_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Rattus norvegicus GN=Prkaa2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.650e-14
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSF---EQPNIDLDDVD 312
            I+ + Y G + D+WSCGVILY L+ G LPF++ ++  L+KKI    F  P + + S   L+  +L  +P+ R T+ ++ E+EWFK+    PS+   E P+ D + +D
Sbjct:  185 ISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSIATLLMHMLQVDPLKRATIKDIREHEWFKQDL--PSYLFPEDPSYDANVID 289          
The following BLAST results are available for this feature:
BLAST of DC900345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
KIN10_ARATH9.106e-1534.88SNF1-related protein kinase catalytic subunit alph... [more]
MARK1_RAT1.189e-1433.02Serine/threonine-protein kinase MARK1 OS=Rattus no... [more]
MARK1_MOUSE1.189e-1433.02Serine/threonine-protein kinase MARK1 OS=Mus muscu... [more]
SNF1_CANGA1.553e-1442.35Carbon catabolite-derepressing protein kinase OS=C... [more]
KIN1_SCHPO2.029e-1438.46Protein kinase kin1 OS=Schizosaccharomyces pombe G... [more]
AAPK2_PONAB2.029e-1437.385'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_PIG2.029e-1437.385'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_HUMAN2.029e-1437.385'-AMP-activated protein kinase catalytic subunit ... [more]
AMPKA_DICDI2.650e-1432.685'-AMP-activated serine/threonine-protein kinase c... [more]
AAPK2_RAT2.650e-1437.385'-AMP-activated protein kinase catalytic subunit ... [more]

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Properties
Property NameValue
Genbank descriptionDC900345 VSS Citrus sinensis cDNA clone VS28902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900345 ID=DC900345; Name=DC900345; organism=Citrus sinensis; type=EST; length=1136bp
ATTAATAATAAAGGCTACGATGGAGCTAAGGCAGATCTCTGGTCTTGCGG
TGTGATTCTTTATGTCTTAATGGCTGGTTACTTGCCTTTTGAAGAATCCA
ATCTGATGGCTTTATATAAGAAGATATTTAAGGCTGACTTCAAGAGTCCT
CCATGGTTCTCGACAAGTGCAAAGAAACTGATCTCAAGAATTTTGGACCC
TAATCCTGTGACACGAATAACGATGGCTGAGGTTATTGAGAATGAGTGGT
TTAAGAAGGGATATAAGCCACCTAGTTTTGAACAACCTAATATTGATCTT
GATGATGTGGATTCTATCTTTAATGAATCGATGGATTCTCGAAACCTTGT
TGTGGAGAGGCGAGAAGAAGGCCCTGTTGCACCTCTCACTATGAATGCGT
TTGAGTTGATCTCCACATCTCAGGGACTCAACCTCAGTTCCCTTTTCGAA
AAGCAAATGGGACTTGTGAAACGAGAAACAAGATTTACATCCAAACGTCC
TGTTAACGAAATTATATCGAAAATTGAGGAAGCTGCATCGCCTTTGGGTT
TTGATGTGAAGAAAAATAATTTCAAGTTGAAGCTTCAAGGGGAAAAAACT
GGACGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAGGTGGCCCC
TTCACTTTACATGGTTGAGCTTCGAAAATCTGGAGGAGATACCTTAGAAT
TTCACAAGTTTTACAAAAACCTTTCGACTGGGCTGAAAGATGTTGTTTGG
AAATCAGGAGATGAAACAATTGTTGAAGGATCTGCAGTCGCTGGTGGCGC
AGGGTCTCAATAGCGGATTTCCTTTCATGACTTGCACTGCTGAATATCTC
CAGCAAATTATATATTGCTTTTGCACCATTGTATCTCAGCTTTGTATTTT
ATCCTCTAGGCCATGTGTTTCCTTCATTTGTGATTCAGAACTCACTTCTC
GTGTACCTTGGTTTGGCTTTTGTGTGGTTTCAGACTTCCAGATGTATCAT
CTCAACGGATATTGAACATAGTCAATTACCTGCAAATTATCAAAAAGAGT
CTCAGTCCACTGTCGTTTTCATTTTGTTTGTTTTTAGTGACTTGTCTATG
GACCAGAAAATTCAATAAAAAGAATATATTGTAAAA
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