DC900342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 8.018e-81 Identity = 148/280 (52.86%), Postives = 208/280 (74.29%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMD-----DETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFK 885 V+GQD AVK+++ AI+R+R GL +P+RPIASF+F GPTGVGK+ELAKALA+Y F EEA++R+DMSE+ME+H VS+LIG+PPGYVGY E QLTE VRRRPY V+LFDEIEKAH DVFN+ LQIL+DGR+T+S+GRTV F NT++IMTSNVGS I D + K+++Y IK V + FRPEF+NR+DE I+F+ L + ++ I + L + +R+ +++++QVT+ + + GY+P+YGARP++R I + +E+ + + +L E K Sbjct: 556 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEPPQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYEKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIK 835
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 5.197e-80 Identity = 145/286 (50.70%), Postives = 205/286 (71.68%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS-----------QYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFK 885 VVGQD AV +++ A++RSR GL DP RPIA+ +F GPTGVGKTEL KALA+ F +EE+++R+DMSEYME+H VS+LIG+PPGYVG+EEGG LTE +RRRP+ V+LFDEIEKAH D+FN+ LQ+ +DG +TDSQGR VSF N +IIMTSNVGS +IL+ D+E +Y +K V++ + FRPE +NR+DE ++F+ L++ Q+ I+ L L ++ R+ + ++V++ +L+ GYDP YGARP++R + + VE+ L++ L G FK Sbjct: 629 VVGQDEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERHTVSKLIGSPPGYVGFEEGGMLTEAIRRRPFTVVLFDEIEKAHPDIFNILLQLFEDGHLTDSQGRRVSFKNALIIMTSNVGSLAIAKGRHGSIGFILDDDEEA----ASYTGMKALVVEELKNYFRPELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARPLRRTVTEIVEDPLSEAFLAGSFK 910
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 5.197e-80 Identity = 146/273 (53.48%), Postives = 204/273 (74.73%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPK---ETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 870 ++GQ+ AVK+V++AI+R+RAGL DP RP SF+F GP+GVGKTEL+KALA+++F ++AL++IDM E+ ++ SRL GAPPGYVGYEEGGQLTE VRR+P++V+LFDEIEKAH +++N LQ+L+DGR+TD QGRTV F NTV+I TSN+G+ I F K E YE +KQ+V D + FRPEF+NR+D+ IVF L R++I +V L + RV ++ + M + +TDAA LL G+DP GARP++R IQ+ +E++L++ IL Sbjct: 518 IIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPVGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKIL 790
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 5.197e-80 Identity = 146/273 (53.48%), Postives = 204/273 (74.73%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPK---ETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 870 ++GQ+ AVK+V++AI+R+RAGL DP RP SF+F GP+GVGKTEL+KALA+++F ++AL++IDM E+ ++ SRL GAPPGYVGYEEGGQLTE VRR+P++V+LFDEIEKAH +++N LQ+L+DGR+TD QGRTV F NTV+I TSN+G+ I F K E YE +KQ+V D + FRPEF+NR+D+ IVF L R++I +V L + RV ++ + M + +TDAA LL G+DP GARP++R IQ+ +E++L++ IL Sbjct: 518 IIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPVGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKIL 790
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 1.158e-79 Identity = 140/274 (51.09%), Postives = 208/274 (75.91%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEF 882 ++GQ+ A+ +V+++I+RSR GL+DP+RPIASF+F+GPTGVGKTEL+K +A +F++ ++ R+DMSEYMEKH+VS++IGAPPGY+G+E GGQLTE VR+ PY++IL DEIEKAH DV +V LQ+LDDG +TD QGRT+SF N++I++TSN+GSQ +++D + E E IK V + F+PEF+NR+DE I+FQ L+ +++ I +LQL +++ R+ + + Q+TD AI L +D +YGARP+KR+IQ+ +E ++A IL + Sbjct: 573 IIGQNNAICAVSDSIKRSRTGLNDPNRPIASFLFLGPTGVGKTELSKVIAKTIFDSNSSITRLDMSEYMEKHSVSKIIGAPPGYLGFESGGQLTEAVRKNPYSLILLDEIEKAHKDVLDVLLQVLDDGIITDGQGRTISFKNSIIVLTSNLGSQ---SINDLSIRNEDKNE-IKNIVNVELKKFFKPEFLNRLDEIIIFQNLELNELKDIAKLQLKKLENRLIKKDLNFQITDEAIDHLVKNSFDNSYGARPLKRIIQKEIETKIANNILNNNY 842
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_TROWT (Chaperone protein clpB OS=Tropheryma whipplei (strain Twist) GN=clpB PE=3 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 1.512e-79 Identity = 146/272 (53.68%), Postives = 204/272 (75.00%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 876 V+ Q A+ +A+A++RSRAGLSDP+RP +F+F+GPTGVGKT+L KALAS +++ E +VRIDMSEY EK ++SRLIGAPPGY+G+E GQLTE VRRRPY+V+LFDE EKAH +VF++ LQ+LD+GR+TDS GRTV F NT+I++TSN+GS+Y + D + TA+E + D R FRPEF+NR+DE ++F+PL + I IV L ++ + KRI DR++ + V++ + L GYD YGARP++R+IQ+ +E+ LAK I+ G Sbjct: 420 VIAQKVAIGVIADAVRRSRAGLSDPNRPSGTFLFLGPTGVGKTQLVKALASLLYDGE--IVRIDMSEYSEKFSISRLIGAPPGYIGHESAGQLTESVRRRPYSVVLFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRY---LSDISLEATTAHEYVN----DEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLIIEG 682
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_TROW8 (Chaperone protein clpB OS=Tropheryma whipplei (strain TW08/27) GN=clpB PE=3 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 1.512e-79 Identity = 146/272 (53.68%), Postives = 204/272 (75.00%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 876 V+ Q A+ +A+A++RSRAGLSDP+RP +F+F+GPTGVGKT+L KALAS +++ E +VRIDMSEY EK ++SRLIGAPPGY+G+E GQLTE VRRRPY+V+LFDE EKAH +VF++ LQ+LD+GR+TDS GRTV F NT+I++TSN+GS+Y + D + TA+E + D R FRPEF+NR+DE ++F+PL + I IV L ++ + KRI DR++ + V++ + L GYD YGARP++R+IQ+ +E+ LAK I+ G Sbjct: 414 VIAQKVAIGVIADAVRRSRAGLSDPNRPSGTFLFLGPTGVGKTQLVKALASLLYDGE--IVRIDMSEYSEKFSISRLIGAPPGYIGHESAGQLTESVRRRPYSVVLFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRY---LSDISLEATTAHEYVN----DEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLIIEG 676
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2) HSP 1 Score: 296.204 bits (757), Expect = 2.579e-79 Identity = 144/273 (52.75%), Postives = 204/273 (74.73%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPK---ETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 870 ++GQ+ AVK+V++AI+R+RAGL DP RP SF+F GP+GVGKTEL+KALA+++F ++AL++IDM E+ ++ SRL GAPPGYVGYEEGGQLTE VRR+P++V+LFDEIEKAH +++N LQ+L+DGR+TD QGRTV F NTV+I TSN+G+ I F + E YE +KQ+V D + FRPEF+NR+D+ IVF L RD+I +V L + RV ++ + M +++T+ A LL G+DP GARP++R IQ+ +E++L++ IL Sbjct: 518 IIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPVGLGFTQGSGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLSRDEIIRMVDLMISRVANQLKVKDMTLELTNKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKIL 790
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_HELPJ (Chaperone protein clpB OS=Helicobacter pylori J99 GN=clpB PE=3 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 2.579e-79 Identity = 146/275 (53.09%), Postives = 205/275 (74.55%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFK 885 VVGQ+ A+K++A+AI+R++AGLSD ++PI SF+F+GPTGVGKTE AKALA ++F++++ L+RIDMSEYMEKHA+SRLIGA PGYVGYEEGGQLTE VRR+PY+V+L DE+EKAH DVFN+ LQ+LD+G +TDS+G V F NT++I+TSNV S +L D K+ A + ++ R F+PEF+NR+DE I F LD I +IV + + VQK+ +R + + + + A +L+ G+D YGARP+KR + + VE++LA+ IL + K Sbjct: 570 VVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEKHAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGALLEEDLSEADKQKA-------IKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENVQKKALERGINITLDEKAKELIAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIK 837
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIN (Chaperone protein clpB OS=Leptospira interrogans GN=clpB PE=3 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 3.369e-79 Identity = 145/274 (52.92%), Postives = 203/274 (74.09%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEF 882 V+GQD A++ V+EA+QRSRAG++DP+RPI +F+F+GPTGVGKTE AKALA ++F+ A+ RIDMSEYME H+V+RLIGAPPGYVGY+EGGQLTE VRRRPY++ILFDEIEKA+ +VFN+FLQILD+GR+TD +GR V F NTVII+TSN+GS+ + + E ++QR+ + F+PEF+NR+DE I+F + I I +QL+ ++++ + + + T+ + G+D YGARP+KR+IQ+ V N L++ IL G+F Sbjct: 575 VIGQDHALRLVSEAVQRSRAGIADPNRPIGTFLFLGPTGVGKTETAKALAEFLFDDVNAMTRIDMSEYMEAHSVARLIGAPPGYVGYDEGGQLTEAVRRRPYSLILFDEIEKANPEVFNIFLQILDEGRLTDGKGRNVDFKNTVIILTSNIGSEV---LGSSEYTSEEKERLVEQRL----KKHFKPEFLNRIDEVILFHSITDSVIHKIADIQLEGLRQKAKENGLDVSFTNELKDYVSKAGFDAEYGARPLKRLIQREVGNALSRYILDGKF 841 The following BLAST results are available for this feature:
BLAST of DC900342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900342 ID=DC900342; Name=DC900342; organism=Citrus sinensis; type=EST; length=1211bpback to top |