DC900315

Overview
NameDC900315
Unique NameDC900315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8073 contig Csv1_Contig8073:1309..1877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  167 VPRF-VDFDNKRAHFRSKIKHQHDHHHSPL----RISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            VP++  DF  K  +FRS+   +      PL     + VRR +I EDSY ++   S  DLK RL + F GE+G+D GGL+RE++ LLS  +FD    LF  +  +  T Q NP+S    EHL+YF+F+GRV+G A+
Sbjct:  405 VPQYKCDFRRKLIYFRSQPGMR------PLPGQCNVKVRRDHIFEDSYAEIMRYSAHDLKKRLMIRFDGEDGLDYGGLSREFFFLLSHKMFDPIYCLFEYSAVDNYTLQINPHSSINPEHLNYFRFIGRVIGLAI 533          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: NEDD4_RAT (E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 2
Query:  182 DFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLR-MRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDK--GALLFTTVGNESTFQPNPNS-VYQTEHLSYFKFVGRVVGKAL 553
            D+  K   FR K+K Q D  +    + +RRA ILEDSY ++  ++    LK RL + F GE+G+D GG+ REW+ L+S+ +F+   G   ++   +  T Q NPNS +   +HLSYFKF+GRV G A+
Sbjct:  507 DYKRKYEFFRRKLKKQTDIPNK-FEMKLRRANILEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATEDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAV 633          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: NEDD4_MOUSE (E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  167 VPRFVDFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDL-KGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNS-VYQTEHLSYFKFVGRVVGKAL 553
            VP   D+  K   FR K+K Q D  +    + +RRA ILEDSY ++      DL K RL + F GE+G+D GG+ REW+ L+S+ +F+    LF     ++ T Q NPNS +   +HLSYFKF+GRV G A+
Sbjct:  503 VPYSRDYKRKYEFFRRKLKKQTDIPNK-FEMKLRRANILEDSYRRIMGVKRADLLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAV 633          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: RSP5_YEAST (E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae GN=RSP5 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.336e-19
Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = 2
Query:  152 SLMLKVPRFV-DFDNKRAHFRSK--IKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVG 544
            SL   VP++  DF  K  +FRS+  ++      H    I VRR  I ED+Y ++  ++ +DLK RL + F GEEG+D GG++RE++ LLS  +F+    LF  +  +  T Q NPNS    EHL+YFKF+GRVVG
Sbjct:  423 SLDQNVPQYKRDFRRKVIYFRSQPALRILPGQCH----IKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVG 553          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HACE1_HUMAN (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 2
Query:   71 FVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVP----RFVDFDNKRAHFRSKIKHQHDHHHS----------PLR----ISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            F+ F  KH ++L  F+ +NP ++   F  +L+ P    RF+    K   F+ + +  ++H HS          P+     + V R  I   S   +   +   LK  + V F GEEG+  G + REW+ +LS  I +    LFT   + +TFQPN NS    +HL+YF+F G+++G AL
Sbjct:  476 FIEFVCKHDEVLKCFVNRNPKIIFDHFHFLLECPELMSRFMHII-KAQPFKDRCEWFYEHLHSGQPDSDMVHRPVNENDILLVHRDSIFRSSCEVVSKANCAKLKQGIAVRFHGEEGMGQG-VVREWFDILSNEIVNPDYALFTQSADGTTFQPNSNSYVNPDHLNYFRFAGQILGLAL 652          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HACE1_MOUSE (E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.082e-17
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 2
Query:   71 FVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVP----RFVDFDNKRAHFRSKIKHQHDHHHS----------PLR----ISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            F+ F  KH ++L  F+ +NP ++   F  +L+ P    RF+    K   F+ + +  ++H HS          P+     + V R  I   S   +   +   LK  + V F GEEG+  G + REW+ +LS  I +    LFT   + +TFQPN NS    +HL+YF+F G+++G AL
Sbjct:  476 FIEFVCKHDEVLKCFVNRNPKIIFDHFHFLLECPELMSRFMHII-KAQPFKDRCEWFYEHLHSGQPDSDMVHRPVSENDILLVHRDSIFRSSCEIVSKANCAKLKQGIAVRFHGEEGMGQG-VVREWFDILSNEIVNPDYALFTQSADGTTFQPNSNSYVNPDHLNYFRFAGQILGLAL 652          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  194 KRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVG-NESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            K AHFR     Q +   S ++I+V R  + EDS+ Q+      DL+ RL V F+GEEG+D GGL REW+ LLS  + +    LF   G N    Q NP S    +HLSYF F+GR +  AL
Sbjct:  546 KLAHFRYLC--QSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMAL 664          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  194 KRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVG-NESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            K AHFR     Q +   S ++I+V R  + EDS+ Q+      DL+ RL V F+GEEG+D GGL REW+ LLS  + +    LF   G N    Q NP S    +HLSYF F+GR +  AL
Sbjct:  550 KLAHFRYLC--QSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMAL 668          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  182 DFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            DF  K  +FR   +      H  ++I+V R  + EDS+ Q+   S QDL+ RL V F GEEG+D GG+ REW+ LLS  + +    LF   G ++   Q NP S    +HL YF+F+GR +  AL
Sbjct:  488 DFKAKVQYFRFWCQQLAMPQH--IKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAGKDNYCLQINPASYINPDHLKYFRFIGRFIAMAL 610          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  182 DFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            DF  K  +FR   +      H  ++I+V R  + EDS+ Q+   S QDL+ RL V F GEEG+D GG+ REW+ LLS  + +    LF   G ++   Q NP S    +HL YF+F+GR +  AL
Sbjct:  527 DFKAKVQYFRFWCQQLAMPQH--IKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAGKDNYCLQINPASYINPDHLKYFRFIGRFIAMAL 649          
The following BLAST results are available for this feature:
BLAST of DC900315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PUB3_SCHPO4.301e-1942.22E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]
NEDD4_RAT5.617e-1941.41E3 ubiquitin-protein ligase NEDD4 OS=Rattus norveg... [more]
NEDD4_MOUSE5.617e-1943.18E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus ... [more]
RSP5_YEAST7.336e-1942.96E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces ... [more]
HACE1_HUMAN1.807e-1731.84E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]
HACE1_MOUSE3.082e-1731.84E3 ubiquitin-protein ligase HACE1 OS=Mus musculus ... [more]
WWP1_MOUSE5.258e-1742.98NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]
WWP1_HUMAN5.258e-1742.98NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom... [more]
ITCH_MOUSE5.258e-1740.00E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
ITCH_HUMAN5.258e-1740.00E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionDC900315 VSS Citrus sinensis cDNA clone VS28665 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900315 ID=DC900315; Name=DC900315; organism=Citrus sinensis; type=EST; length=569bp
CTCGTGCCGAATTCGGCACGAGCAGAAAACCTCAGGGCATGGTACAAAAG
TTGATGAAAAACAGATTGCTTTTGTGAGGTTCTCAGAAAAGCACAGGAAG
CTGCTAAATGCTTTCATCCGTCAAAATCCTGGATTACTAGAGAAGTCTTT
CTCACTCATGCTGAAGGTTCCTCGCTTTGTTGATTTTGACAATAAGCGTG
CACATTTCAGATCAAAAATAAAGCATCAACATGATCACCACCACAGTCCT
TTGAGAATATCTGTAAGAAGAGCTTACATTCTTGAAGATTCATACAACCA
ACTGCGCATGCGATCAACGCAAGATTTGAAGGGAAGGTTGACTGTTCACT
TTCAAGGAGAGGAAGGCATTGATGCCGGTGGCCTTACAAGGGAGTGGTAC
CAATTGCTGTCAAGGGTTATTTTTGACAAGGGAGCCCTACTTTTCACAAC
AGTGGGCAATGAATCAACATTCCAACCCAACCCCAACTCTGTTTACCAAA
CTGAACATCTTTCATATTTCAAGTTTGTTGGGCGAGTTGTTGGAAAAGCT
CTTTGTGCCGTGTGCATTC
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