DC900315

Overview
NameDC900315
Unique NameDC900315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8073 contig Csv1_Contig8073:1309..1877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: NEDD4_DROME (E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.968e-17
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  167 VPRFVDFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDL-KGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDK--GALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            VP   D+  K  +F+S I+ +  +  +   I +RR  ILEDSY  +   +  DL K +L V F+GE G+D GGL REW+ LLS+ +F+   G   ++ + N +    N + +   EHLSYFKF+GR+ G A+
Sbjct:  623 VPYSRDYKQKYEYFKSHIR-KPTNVPNKFEIRIRRTSILEDSYRIISSVTKTDLLKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNYTLQINNGSGLCNEEHLSYFKFIGRIAGMAV 753          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF2_XENLA (E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.171e-16
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  161 LKVPRFV-DFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNE-STFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            L VPR+  D  +K    R ++  Q        RI V R  I E+SY Q+     +DL  RL + F+GEEG+D GG+ REW  LLS  + +    LF    ++  T Q NP+S    EHLSYF FVGR++G A+
Sbjct:  366 LTVPRYKRDLVHKLKSLRQELSQQQPQA-GHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHDMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAV 497          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF2_MOUSE (E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus GN=Smurf2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  161 LKVPRFV-DFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNE-STFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            L VPR+  D   K    R ++  Q        RI V R  I E+SY Q+     +DL  RL + F+GEEG+D GG+ REW  LLS  + +    LF    ++  T Q NP+S    EHLSYF FVGR++G A+
Sbjct:  363 LTVPRYKRDLVQKLKILRQELSQQQPQA-GHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAV 494          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF2_HUMAN (E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  161 LKVPRFV-DFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNE-STFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            L VPR+  D   K    R ++  Q        RI V R  I E+SY Q+     +DL  RL + F+GEEG+D GG+ REW  LLS  + +    LF    ++  T Q NP+S    EHLSYF FVGR++G A+
Sbjct:  363 LTVPRYKRDLVQKLKILRQELSQQQPQA-GHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAV 494          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF1_MOUSE (E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  254 RISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            RI V R  I E+SY Q+     +DLK RL V F+GEEG+D GG+ REW  LL   + +    LF  +  N  T Q NP+S    +HLSYF FVGR++G A+
Sbjct:  374 RIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLAV 474          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 2
Query:   71 FVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVP----RFVDFDNKRAHFRSKIKHQHDHH----------HSPLR----ISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            F+ F  KH  +L  F+ +NP ++   F  +L+ P    RF+    K   F+ + +  ++H           H P+     + V R  I   S   +   + + LK  + V F GEEG+  G + REW+ +LS  I +    LFT   + +TFQPN NS    +HL+YF+F G ++G AL
Sbjct:  479 FIEFVCKHDDVLKCFVTRNPKIIFDHFHFLLECPELMSRFMHII-KAQPFKERCEWFYEHLLAGQPDSDMVHRPVNENDILLVHRDSIFRSSCEVVFKSNCEKLKQGIAVRFHGEEGMGQG-VVREWFDILSSEIINPDYALFTQSADGTTFQPNSNSSVNPDHLNYFRFAGEILGLAL 655          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SUDX_DROME (E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.609e-16
Identity = 58/162 (35.80%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   77 RFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVD--FDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVG-NESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            RF   H      F    PG   K    +  VPR  +  F  K + FR     Q +   S ++I+V R  + EDSY+Q+      +L+ RL + F+GEEG+D GG++REW+ LLS  + +    LF     N  + Q NP S    +HL YFKF+GR +  AL
Sbjct:  537 RFFVDHNTRRTTFEDPRPGA-PKGAKGVYGVPRAYERSFRWKLSQFRYLC--QSNALPSHIKITVTRQTLFEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMAL 695          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF1_XENLA (E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laevis GN=smurf1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.609e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  254 RISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            R+ V R  I E+SY Q+     +DLK RL V F+GEEG+D GG+ REW  LL   + +    LF  +  N  T Q NP+S    +HLSYF FVGR++G A+
Sbjct:  374 RVEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLAV 474          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.609e-16
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 2
Query:   71 FVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVP----RFVDFDNKRAHFRSKIKHQHDHH----------HSPLR----ISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            F+ F  KH ++L  F+ +NP ++   F  +L+ P    RF+    K   F+ + +  ++H           H P+     + V R  I   S   +   + + LK  + V F GEEG+  G + REW+ +LS  + +    LFT   + +TFQPN NS    +HL+YF+F G ++G AL
Sbjct:  511 FIEFVCKHDEVLKCFVTRNPKIIFDHFHFLLECPELMSRFMHII-KAQPFKERCEWFYEHLLAGQPDTDMVHRPVNENDILLVHRDSIFRSSCEVVFKSNCEKLKQGIAVRFHGEEGMGQG-VVREWFDILSSEMINPDYALFTQSADGTTFQPNSNSSVNPDHLNYFRFAGEILGLAL 687          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF2_DANRE (E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio GN=smurf2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.408e-16
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  161 LKVPRFV-DFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNE-STFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            L VP++  D   K    R ++  Q        RI V R  I E+SY Q+     +DL  RL V F+GEEG+D GG+ REW  LLS  + +    LF    ++  T Q NP+S    EHLSYF FVGR++G A+
Sbjct:  380 LTVPKYKRDLVQKLKILRQELSQQQPQA-GHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAV 511          
The following BLAST results are available for this feature:
BLAST of DC900315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
NEDD4_DROME8.968e-1738.64E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila m... [more]
SMUF2_XENLA1.171e-1640.60E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laev... [more]
SMUF2_MOUSE1.998e-1640.60E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus... [more]
SMUF2_HUMAN1.998e-1640.60E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens... [more]
SMUF1_MOUSE1.998e-1646.53E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus... [more]
HACE1_XENTR1.998e-1631.28E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]
SUDX_DROME2.609e-1635.80E3 ubiquitin-protein ligase Su(dx) OS=Drosophila m... [more]
SMUF1_XENLA2.609e-1645.54E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laev... [more]
HACE1_XENLA2.609e-1630.73E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
SMUF2_DANRE3.408e-1640.60E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionDC900315 VSS Citrus sinensis cDNA clone VS28665 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900315 ID=DC900315; Name=DC900315; organism=Citrus sinensis; type=EST; length=569bp
CTCGTGCCGAATTCGGCACGAGCAGAAAACCTCAGGGCATGGTACAAAAG
TTGATGAAAAACAGATTGCTTTTGTGAGGTTCTCAGAAAAGCACAGGAAG
CTGCTAAATGCTTTCATCCGTCAAAATCCTGGATTACTAGAGAAGTCTTT
CTCACTCATGCTGAAGGTTCCTCGCTTTGTTGATTTTGACAATAAGCGTG
CACATTTCAGATCAAAAATAAAGCATCAACATGATCACCACCACAGTCCT
TTGAGAATATCTGTAAGAAGAGCTTACATTCTTGAAGATTCATACAACCA
ACTGCGCATGCGATCAACGCAAGATTTGAAGGGAAGGTTGACTGTTCACT
TTCAAGGAGAGGAAGGCATTGATGCCGGTGGCCTTACAAGGGAGTGGTAC
CAATTGCTGTCAAGGGTTATTTTTGACAAGGGAGCCCTACTTTTCACAAC
AGTGGGCAATGAATCAACATTCCAACCCAACCCCAACTCTGTTTACCAAA
CTGAACATCTTTCATATTTCAAGTTTGTTGGGCGAGTTGTTGGAAAAGCT
CTTTGTGCCGTGTGCATTC
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