DC900315

Overview
NameDC900315
Unique NameDC900315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8073 contig Csv1_Contig8073:1309..1877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF1_HUMAN (E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  254 RISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            RI V R  I E+SY Q+     +DLK RL V F+GEEG+D GG+ REW  LL   + +    LF  +  N    Q NP+S    +HLSYF FVGR++G A+
Sbjct:  400 RIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYMLQINPDSSINPDHLSYFHFVGRIMGLAV 500          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  245 SPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVG-NESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            S ++ISV R  + EDS+ Q+      DL+ RL +  +GEEG+D GG+ REW+ LLS  + +    LF   G N    Q NP S    +HL+YF+F+GR +  AL
Sbjct:  513 SHVKISVSRQTLFEDSFQQIMNMKPYDLRRRLYIIMRGEEGLDYGGIAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASSINPDHLTYFRFIGRFIAMAL 616          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  245 SPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVG-NESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            S ++ISV R  + EDS+ Q+      DL+ RL +  +GEEG+D GG+ REW+ LLS  + +    LF   G N    Q NP S    +HL+YF+F+GR +  AL
Sbjct:  513 SHVKISVSRQTLFEDSFQQIMNMKPYDLRRRLYIIMRGEEGLDYGGIAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASSINPDHLTYFRFIGRFIAMAL 616          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: NED4L_PONAB (E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  167 VPRFVDFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQD-LKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNS-VYQTEHLSYFKFVGRVVGKAL 553
            VP   +F  K  +FR K+K   D  +    + + R  I E+SY ++      D LK RL + F+ E+G+D GG+ REW+ LLS+ +F+    LF     ++ T Q NPNS +   +HLSYF F+GRV G A+
Sbjct:  575 VPYSREFKQKYDYFRKKLKKPADIPNR-FEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAV 705          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: NED4L_MOUSE (E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  167 VPRFVDFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQD-LKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNS-VYQTEHLSYFKFVGRVVGKAL 553
            VP   +F  K  +FR K+K   D  +    + + R  I E+SY ++      D LK RL + F+ E+G+D GG+ REW+ LLS+ +F+    LF     ++ T Q NPNS +   +HLSYF F+GRV G A+
Sbjct:  620 VPYSREFKQKYDYFRKKLKKPADIPNR-FEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAV 750          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: NED4L_HUMAN (E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  167 VPRFVDFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQD-LKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNS-VYQTEHLSYFKFVGRVVGKAL 553
            VP   +F  K  +FR K+K   D  +    + + R  I E+SY ++      D LK RL + F+ E+G+D GG+ REW+ LLS+ +F+    LF     ++ T Q NPNS +   +HLSYF F+GRV G A+
Sbjct:  591 VPYSREFKQKYDYFRKKLKKPADIPNR-FEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAV 721          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: SMUF1_DROME (E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.921e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  254 RISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            R+ V R  I E+SY  +     +D++ RL V F+GEEG+D GG+ REW  LLSR + +    LF  +  +  T Q NP+S    +HLSYF FVGR +G A+
Sbjct:  703 RLEVSRNEIFEESYRLIMKMRAKDMRKRLMVKFKGEEGLDYGGVAREWLHLLSREMLNPQYGLFQYSRDDHYTLQINPDSGVNPDHLSYFHFVGRTLGIAV 803          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 42/122 (34.43%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  206 FRSKIKHQHDH-----HHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            ++ KI + +D      + + L++ V RA   ED+Y+ +   S  D+K +L + F+ E+G+D GG++RE++ +LS  IF+ G  LF    +++   Q +P S    +  SYF+FVGRV+G A+
Sbjct:  297 YQRKIAYMYDRPEMAVNDAQLQLKVSRATTFEDAYDIISKLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIFNPGYSLFEYATDDNYGLQISPLSSVNPDFRSYFRFVGRVMGLAI 418          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HECW2_MOUSE (E3 ubiquitin-protein ligase HECW2 OS=Mus musculus GN=Hecw2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 46/127 (36.22%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  182 DFDNKRAHFRSKIKHQ-HDHHHSPLRISVRRAYILEDSYNQLRMRSTQDL-KGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            DF+ K  +F  K++ + +      L++ +RR ++LED++NQ+   S +DL + +L V F GEEG+D  G +RE++ L+SR +F+    LF    N++ T Q +P S +   H  +F+F GR++G AL
Sbjct: 1198 DFEAKLRNFYRKLETKGYGQGPGKLKLIIRRDHLLEDAFNQIMGYSRKDLQRNKLYVTFVGEEGLDYSGPSREFFFLVSRELFNPYYGLFEYSANDTYTVQISPMSAFVDNHHEWFRFSGRILGLAL 1324          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HECW2_HUMAN (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 46/127 (36.22%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  182 DFDNKRAHFRSKIKHQ-HDHHHSPLRISVRRAYILEDSYNQLRMRSTQDL-KGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            DF+ K  +F  K++ + +      L++ +RR ++LED++NQ+   S +DL + +L V F GEEG+D  G +RE++ L+SR +F+    LF    N++ T Q +P S +   H  +F+F GR++G AL
Sbjct: 1192 DFEAKLRNFYRKLETKGYGQGPGKLKLIIRRDHLLEDAFNQIMGYSRKDLQRNKLYVTFVGEEGLDYSGPSREFFFLVSRELFNPYYGLFEYSANDTYTVQISPMSAFVDNHHEWFRFSGRILGLAL 1318          
The following BLAST results are available for this feature:
BLAST of DC900315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SMUF1_HUMAN9.916e-1645.54E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens... [more]
WWP2_MOUSE1.295e-1541.35NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
WWP2_HUMAN1.295e-1541.35NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom... [more]
NED4L_PONAB2.209e-1538.64E3 ubiquitin-protein ligase NEDD4-like OS=Pongo ab... [more]
NED4L_MOUSE2.209e-1538.64E3 ubiquitin-protein ligase NEDD4-like OS=Mus musc... [more]
NED4L_HUMAN2.209e-1538.64E3 ubiquitin-protein ligase NEDD4-like OS=Homo sap... [more]
SMUF1_DROME4.921e-1543.56E3 ubiquitin-protein ligase Smurf1 OS=Drosophila m... [more]
PUB2_SCHPO4.166e-1434.43E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
HECW2_MOUSE7.106e-1436.22E3 ubiquitin-protein ligase HECW2 OS=Mus musculus ... [more]
HECW2_HUMAN7.106e-1436.22E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900315 VSS Citrus sinensis cDNA clone VS28665 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900315 ID=DC900315; Name=DC900315; organism=Citrus sinensis; type=EST; length=569bp
CTCGTGCCGAATTCGGCACGAGCAGAAAACCTCAGGGCATGGTACAAAAG
TTGATGAAAAACAGATTGCTTTTGTGAGGTTCTCAGAAAAGCACAGGAAG
CTGCTAAATGCTTTCATCCGTCAAAATCCTGGATTACTAGAGAAGTCTTT
CTCACTCATGCTGAAGGTTCCTCGCTTTGTTGATTTTGACAATAAGCGTG
CACATTTCAGATCAAAAATAAAGCATCAACATGATCACCACCACAGTCCT
TTGAGAATATCTGTAAGAAGAGCTTACATTCTTGAAGATTCATACAACCA
ACTGCGCATGCGATCAACGCAAGATTTGAAGGGAAGGTTGACTGTTCACT
TTCAAGGAGAGGAAGGCATTGATGCCGGTGGCCTTACAAGGGAGTGGTAC
CAATTGCTGTCAAGGGTTATTTTTGACAAGGGAGCCCTACTTTTCACAAC
AGTGGGCAATGAATCAACATTCCAACCCAACCCCAACTCTGTTTACCAAA
CTGAACATCTTTCATATTTCAAGTTTGTTGGGCGAGTTGTTGGAAAAGCT
CTTTGTGCCGTGTGCATTC
back to top