DC900315

Overview
NameDC900315
Unique NameDC900315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8073 contig Csv1_Contig8073:1309..1877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HECW1_HUMAN (E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 49/148 (33.11%), Postives = 85/148 (57.43%), Query Frame = 2
Query:  119 RQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQ-HDHHHSPLRISVRRAYILEDSYNQLRMRSTQDL-KGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            + +PGL  +  S     P   DF+ K  +F  K++ +        +++ +RR ++LE ++NQ+   S ++L + +L V F GEEG+D  G +RE++ LLS+ +F+    LF    N++ T Q +P S +   HL +F+F GR++G AL
Sbjct: 1207 QNSPGL--QRASARAPSPYRRDFEAKLRNFYRKLEAKGFGQGPGKIKLIIRRDHLLEGTFNQVMAYSRKELQRNKLYVTFVGEEGLDYSGPSREFFFLLSQELFNPYYGLFEYSANDTYTVQISPMSAFVENHLEWFRFSGRILGLAL 1352          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 55/164 (33.54%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   74 VRFSEKHRKLLNA-FIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQH-DHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT--TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            V  S K R +L A FIR          SL   +     F +K   F+ +++  H    HS + + V R  +LE S    R  S  D      V FQ EE +D GG  REW++L+ + +FD  + LF   T  N++   PNPN       L  ++F GR+VGK L
Sbjct:  411 VELSCKERNILAATFIR----------SLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTSQLFARFTDSNQALVHPNPNRPAHL-RLKMYEFAGRLVGKCL 563          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 55/164 (33.54%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   74 VRFSEKHRKLLNA-FIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQH-DHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT--TVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            V  S K R +L A FIR          SL   +     F +K   F+ +++  H    HS + + V R  +LE S    R  S  D      V FQ EE +D GG  REW++L+ + +FD    LFT  +  N++   PNPN       L  ++F GR+VGK L
Sbjct:  411 VELSCKERNILAATFIR----------SLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNNQALVHPNPNRPAHL-RLKMYEFAGRLVGKCL 563          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  359 EEGIDAGGLTREWYQLLSRVIFDKGALLF-TTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            EEG DAGGL REWY ++SR +F+    LF T+ G+  T+  NP+S     HLSYFKFVGR+V KA+
Sbjct:    1 EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAV 66          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2
Query:   38 HGTKVDEKQIAFVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQHDHHHSP--LRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQG-----EEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            H  + D K     +  +K RK     ++  P ++     ++L       F N     + K+     +  SP    I++RR+ +LED Y+QLR  S   +KG + V F       E GID  G+ +E+ + + + +FD    LF T  +     P+P S     +L  F+FVG+++GKA+
Sbjct:  619 HWLRKDLKPTLLFQELDKERKRAQLLLQYIPHVIPHKNRVLL-------FRNIVTKEKEKLGLVETNTASPHVTHITIRRSRMLEDGYDQLRQLSQNAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSSGDRLYPSPTSYIHENYLQLFEFVGKMLGKAV 790          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: HECW1_MOUSE (E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 47/148 (31.76%), Postives = 85/148 (57.43%), Query Frame = 2
Query:  119 RQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQ-HDHHHSPLRISVRRAYILEDSYNQLRMRSTQDL-KGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNES-TFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            + +PGL  +  S     P   DF+ K  +F  K++ +        +++ +RR ++LE ++NQ+   S ++L + +L + F GEEG+D  G +RE++ LLS+ +F+    LF    N++ T Q +P S +   +L +F+F GR++G AL
Sbjct: 1205 QNSPGL--QRASARAPSPYRRDFEAKLRNFYRKLEAKGFGQGPGKVKLIIRRDHLLEGTFNQVMAYSRKELQRNKLYITFVGEEGLDYSGPSREFFFLLSQELFNPYYGLFEYSANDTYTVQISPMSAFVENYLEWFRFSGRILGLAL 1350          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  257 ISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQG-----EEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            I++RR+ +LED Y QLR  S   +KG + V F       E GID  G+ +E+ + + + +FD    LF T   +    P+P S     +L  F+FVG+++GKA+
Sbjct:  685 ITIRRSRMLEDGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEFVGKMLGKAV 788          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  257 ISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQG-----EEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKAL 553
            I++RR+ +LED Y QLR  S   +KG + V F       E GID  G+ +E+ + + + +FD    LF T   +    P+P S     +L  F+FVG+++GKA+
Sbjct:  683 ITIRRSRMLEDGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEFVGKMLGKAV 786          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 42/144 (29.17%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  155 LMLKVPRFVDFDNKRAHFRSKIKHQHDHHHSP-----LRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGE-----EGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNS-VYQTEHLSYFKFVGRVVGKAL 553
            ++++ P  + F ++   F +++      H S       R  +RR +ILED+YNQ+   S  DL+  + V F  E      GID GG+ +++ + ++R  FD    LF    +   + PNP S +   +HL +F F+G ++ KA+
Sbjct:  630 ILMQAPFLIPFTSRVKIFTTQLATARQSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGGIFKDFMEKITRAAFDVQYGLFKETADHMLY-PNPGSGMIHEQHLQFFHFLGSLLAKAM 772          
BLAST of DC900315 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  251 LRISVRRAYILEDSYNQLRMRSTQ---DLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALCAVCI 568
            LR+ VRR +I++D+  +L M + +   DLK +L V F+GE+G+D GG+++E++QL+   IF+    +FT   +   F  NP+S ++TE    F  +G V+G A+   CI
Sbjct:  523 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSS-FETE--GQFTLIGIVLGLAIYNNCI 628          
The following BLAST results are available for this feature:
BLAST of DC900315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HECW1_HUMAN6.016e-1333.11E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens ... [more]
K0317_MOUSE1.026e-1233.54Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 ... [more]
K0317_HUMAN1.750e-1233.54Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 ... [more]
HUWE1_RAT3.899e-1254.55E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
UBE3B_XENTR5.092e-1227.93Ubiquitin-protein ligase E3B OS=Xenopus tropicalis... [more]
HECW1_MOUSE5.092e-1231.76E3 ubiquitin-protein ligase HECW1 OS=Mus musculus ... [more]
UBE3B_MOUSE6.651e-1235.58Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
UBE3B_HUMAN6.651e-1235.58Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
UPL6_ARATH1.935e-1129.17E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_HUMAN3.301e-1137.61Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionDC900315 VSS Citrus sinensis cDNA clone VS28665 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900315 ID=DC900315; Name=DC900315; organism=Citrus sinensis; type=EST; length=569bp
CTCGTGCCGAATTCGGCACGAGCAGAAAACCTCAGGGCATGGTACAAAAG
TTGATGAAAAACAGATTGCTTTTGTGAGGTTCTCAGAAAAGCACAGGAAG
CTGCTAAATGCTTTCATCCGTCAAAATCCTGGATTACTAGAGAAGTCTTT
CTCACTCATGCTGAAGGTTCCTCGCTTTGTTGATTTTGACAATAAGCGTG
CACATTTCAGATCAAAAATAAAGCATCAACATGATCACCACCACAGTCCT
TTGAGAATATCTGTAAGAAGAGCTTACATTCTTGAAGATTCATACAACCA
ACTGCGCATGCGATCAACGCAAGATTTGAAGGGAAGGTTGACTGTTCACT
TTCAAGGAGAGGAAGGCATTGATGCCGGTGGCCTTACAAGGGAGTGGTAC
CAATTGCTGTCAAGGGTTATTTTTGACAAGGGAGCCCTACTTTTCACAAC
AGTGGGCAATGAATCAACATTCCAACCCAACCCCAACTCTGTTTACCAAA
CTGAACATCTTTCATATTTCAAGTTTGTTGGGCGAGTTGTTGGAAAAGCT
CTTTGTGCCGTGTGCATTC
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