DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RICAH (60 kDa chaperonin OS=Rickettsia akari (strain Hartford) GN=groL PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 4.347e-69
Identity = 135/243 (55.56%), Postives = 179/243 (73.66%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LT G+LITE+LGM LE V++  LGT K+VT+SK++TVI+DG+GDKK+IE+R  QI+S I  +TSDYDKEKLQERLAKLSGGVAVLK+GGA+E EV E+KDRV DAL AT+AAVEEG+V GGGV               N DQ+ G++I+  ALK P+  I             KLLE ++ + G++A   +YVDM+K+GIIDP KV+RTAL DAASV+SL+ TTE ++V+ P + ++A
Sbjct:  290 EDIAILTKGELITEDLGMKLENVSIKSLGTAKRVTVSKENTVIVDGSGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLKVENKDQQAGIEIVIEALKDPLKQIIENAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKEDA 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 4.347e-69
Identity = 131/244 (53.69%), Postives = 176/244 (72.13%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG++++E+LG+ LE V ++MLG  KKV I KD+T I+DG G +  I+ R  QIR  I+ +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV E+KDRV DAL+AT+AAVEEGI+PGGG+              AN DQ+ G+ I++ AL+ P   I             KLLE  + + G++AA GEY D+VK+G+IDP KV+RTAL DAASV++L+ TTEA+V ELPKE K AP
Sbjct:  290 EDIAILTGGNVVSEDLGIKLENVTVNMLGRAKKVVIDKDNTTIVDGVGARTDIDARIAQIRQQIDTTTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALLRALKALDGLKAANDDQQSGIDIVRRALRAPARQIADNAGEDGAWIVGKLLESSDYNWGFNAATGEYEDLVKAGVIDPAKVVRTALQDAASVAALLITTEALVAELPKEEKAAP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 7.414e-69
Identity = 137/244 (56.15%), Postives = 177/244 (72.54%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+E+LG+ LE V LDMLG  KKV+I+K++T I+DGAG K  IE R  QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDR+ DALNAT+AAV+EGIVPGGGV               N DQ  GV I++ AL++P   I             K+LE++  D GY+A  GEY DM+  GIIDP+KV+RTAL DAASV+SL+ TTEA++ ELPK  K+AP
Sbjct:  290 EDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKG-ENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPK--KDAP 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 7.414e-69
Identity = 137/244 (56.15%), Postives = 177/244 (72.54%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+E+LG+ LE V LDMLG  KKV+I+K++T I+DGAG K  IE R  QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDR+ DALNAT+AAV+EGIVPGGGV               N DQ  GV I++ AL++P   I             K+LE++  D GY+A  GEY DM+  GIIDP+KV+RTAL DAASV+SL+ TTEA++ ELPK  K+AP
Sbjct:  290 EDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKG-ENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPK--KDAP 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RICCN (60 kDa chaperonin OS=Rickettsia conorii GN=groL PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 9.683e-69
Identity = 137/244 (56.15%), Postives = 175/244 (71.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G+LITE+LGM LE V++  LGT K+VTISK++TVI+DG GDKK+IE+R  QI+S I  +TSDYDKEKLQERLAKLSGGVAVLK+GGA+E EV E+KDRV DAL AT+AAVEEG+V GGGV               N DQ+ G++I+  ALK P+  I             KLLE  + + G++A   +YVDM+K+GIIDP KV+RTAL DAASV+SL+ TTE ++V+ P   K  P
Sbjct:  290 EDIAILTKGELITEDLGMKLENVSIKSLGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSSDKAEP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RICCK (60 kDa chaperonin OS=Rickettsia canadensis (strain McKiel) GN=groL PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 9.683e-69
Identity = 136/244 (55.74%), Postives = 177/244 (72.54%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G+LITE+LGM LE V++  LGT K+VTISK++TVI+DG+GDKKSIE+R  QI+S I  +TSDYDKEKLQERLAKLSGGVAVLK+GGA+E EV E+KDRV DAL AT+AAVEEG+V GGGV               N DQ+ G++I+  ALK P+  I             KLLE  + + G++A   +YVDM+++GIIDP KV+RTAL DAASV+SL+ TTE ++V+ P + +  P
Sbjct:  290 EDIAILTKGELITEDLGMKLENVSIKSLGTAKRVTISKENTVIVDGSGDKKSIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHTSQILTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIQAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSKEEPMP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RICBR (60 kDa chaperonin OS=Rickettsia bellii (strain RML369-C) GN=groL PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 9.683e-69
Identity = 139/244 (56.97%), Postives = 177/244 (72.54%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G+LITE+LGM LE V+L  LG  K+VTISK++TVI+DG+GDKK+IEER  QI+S I  +TSDYDKEKLQERLAKLSGGVAVLK+GGA+E EV E+KDRV DAL AT+AAVEEG+V GGGV               N DQ+ G++++  ALK P+  I             KLLE  + + G++A   +YVDM+K+GIIDP KV+RTAL DAASV+SL+ TTE ++V+ P E KE P
Sbjct:  290 EDIAILTNGELITEDLGMKLENVSLKSLGHAKRVTISKENTVIVDGSGDKKNIEERVLQIKSHIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQALKNLKVDNKDQQAGIELVIEALKDPIKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEP-EDKENP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RICB8 (60 kDa chaperonin OS=Rickettsia bellii (strain OSU 85-389) GN=groL PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 9.683e-69
Identity = 139/244 (56.97%), Postives = 177/244 (72.54%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G+LITE+LGM LE V+L  LG  K+VTISK++TVI+DG+GDKK+IEER  QI+S I  +TSDYDKEKLQERLAKLSGGVAVLK+GGA+E EV E+KDRV DAL AT+AAVEEG+V GGGV               N DQ+ G++++  ALK P+  I             KLLE  + + G++A   +YVDM+K+GIIDP KV+RTAL DAASV+SL+ TTE ++V+ P E KE P
Sbjct:  290 EDIAILTNGELITEDLGMKLENVSLKSLGHAKRVTISKENTVIVDGSGDKKNIEERVLQIKSHIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQALKNLKVDNKDQQAGIELVIEALKDPIKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEP-EDKENP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PARL1 (60 kDa chaperonin OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=groL PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 2.157e-68
Identity = 135/243 (55.56%), Postives = 172/243 (70.78%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +DLAVL+GG +I+E+LG+ LE V LDMLG  K+V+I+KDDT I+DGAG KK IE R  QI+  IE++TSDYDKEKLQERLAKL+GGVAV+K+GGA+EAEV E+KDRV DALNAT+AAVEEGIVPGGG                N D + G+ II+ AL+ P+  I             K+LE    + G+DA K EY D+V +GIIDP KV+RTAL DAAS++ L+ TTEA++ + PK+   A
Sbjct:  289 EDLAVLSGGQVISEDLGIKLESVTLDMLGKAKRVSITKDDTTIVDGAGKKKDIEARVAQIKRQIEDTTSDYDKEKLQERLAKLAGGVAVIKVGGATEAEVKERKDRVDDALNATRAAVEEGIVPGGGTALLMASKAVGKLVEDNRDIQAGINIIRRALEAPIRQIVENAGVEGSIVVQKVLESKQANFGFDAQKEEYCDLVAAGIIDPTKVVRTALQDAASIAGLLITTEAMIADAPKKDNGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RICRS (60 kDa chaperonin OS=Rickettsia rickettsii (strain Sheila Smith) GN=groL PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.817e-68
Identity = 136/242 (56.20%), Postives = 175/242 (72.31%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            +D+A+LT G+LITE+LGM LE V++  LGT K+VTISK++TVI+DG GDKK+IE+R  QI+S I  +TSDYDKEKLQERLAKLSGGVAVLK+GGA+E EV E+KDRV DAL AT+AAVEEG+V GGGV               N DQ+ G++I+  ALK P+  I             KLLE  + + G++A   +YVDM+K+GIIDP KV+RTAL DAASV+SL+ TTE ++V+ P +  E
Sbjct:  290 EDIAILTKGELITEDLGMKLENVSIKSLGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKAE 531          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RICAH4.347e-6955.5660 kDa chaperonin OS=Rickettsia akari (strain Hart... [more]
CH602_SPHAL4.347e-6953.6960 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH604_RHIME7.414e-6956.1560 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4... [more]
CH601_RHIME7.414e-6956.1560 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH60_RICCN9.683e-6956.1560 kDa chaperonin OS=Rickettsia conorii GN=groL PE... [more]
CH60_RICCK9.683e-6955.7460 kDa chaperonin OS=Rickettsia canadensis (strain... [more]
CH60_RICBR9.683e-6956.9760 kDa chaperonin OS=Rickettsia bellii (strain RML... [more]
CH60_RICB89.683e-6956.9760 kDa chaperonin OS=Rickettsia bellii (strain OSU... [more]
CH60_PARL12.157e-6855.5660 kDa chaperonin OS=Parvibaculum lavamentivorans ... [more]
CH60_RICRS2.817e-6856.2060 kDa chaperonin OS=Rickettsia rickettsii (strain... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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