DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ORITI (60 kDa chaperonin OS=Orientia tsutsugamushi (strain Ikeda) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 118/239 (49.37%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVN-LDMLGTCKKVTISKDDTVILDGAGD---KKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 706
            +D+A+LT G++ITE+LG+ LEKVN    LGT  +V ++KD T I+    +   +K +  RCEQIR AI+++TSDY+KEKLQERLAKL  GVAVLK+GGA+E E  E+KDRV DAL+AT+AAVEEGIVPGGGV               N DQ++G+ II+  L+ PV  I             +L + ++ + G+DA   +YVDM+K+GI+DP KV+RTAL DA SV+SL+  T A++ +
Sbjct:  289 EDIAILTNGEVITEQLGIKLEKVNDTSKLGTANRVIVTKDHTTIVHDKNNSDIEKKVNSRCEQIREAIKDTTSDYEKEKLQERLAKLRNGVAVLKVGGATEVEQKERKDRVEDALHATRAAVEEGIVPGGGVALFYASRVLDSLKFDNEDQRVGINIIKKVLEAPVRQIVKNAGGKEDVVVNELSKSNDKNRGFDARTMQYVDMIKAGIVDPTKVVRTALQDAFSVASLVIATSAMITD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ORITB (60 kDa chaperonin OS=Orientia tsutsugamushi (strain Boryong) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 118/239 (49.37%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVN-LDMLGTCKKVTISKDDTVILDGAGD---KKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 706
            +D+A+LT G++ITE+LG+ LEKVN    LGT  +V ++KD T I+    +   +K +  RCEQIR AI+++TSDY+KEKLQERLAKL  GVAVLK+GGA+E E  E+KDRV DAL+AT+AAVEEGIVPGGGV               N DQ++G+ II+  L+ PV  I             +L + ++ + G+DA   +YVDM+K+GI+DP KV+RTAL DA SV+SL+  T A++ +
Sbjct:  289 EDIAILTNGEVITEQLGIKLEKVNDTSKLGTANRVIVTKDHTTIVHDKNNSDIEKKVNSRCEQIREAIKDTTSDYEKEKLQERLAKLRNGVAVLKVGGATEVEQKERKDRVEDALHATRAAVEEGIVPGGGVALFYASRVLDSLKFDNEDQRVGINIIKKVLEAPVRQIVKNAGGKEDVVVNELSKSNDKNRGFDARTMQYVDMIKAGIVDPTKVVRTALQDAFSVASLVIATSAMITD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HELPG (60 kDa chaperonin OS=Helicobacter pylori (strain G27) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 125/244 (51.23%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+AVLTGG +I+EELG+ LE   ++ LG   ++ I KD+T I+DG G    +++R  QI++ I ++TSDYDKEKLQERLAKLSGGVAV+K+G ASE E+ EKKDRV DAL+ATKAAVEEGIV GGG                + D+K+G +II  A+K P+  I             + +E+     G++A+ G+YVDM K GIIDPLKV R AL +A SVSSL+ TTEA V E+ KE K AP
Sbjct:  289 KDIAVLTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHL--NLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNE-VEKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEI-KEEKAAP 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_GEOSM (60 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 120/244 (49.18%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+EE+G  LE   LDMLG  KK+T+ KD+T I+DG G +  I+ R + IR+ I+ ++SDYD+EKLQERLAKL GGVAV+K+G A+E E+ EKK RV DAL+AT+AAV+EGIVPGGGV              A  +Q+ GV +I+ AL+ P+  I             K ++      GY+AA   YVDM+++GIIDP KV R+AL +AASV+ LM TTEA++ + PKE    P
Sbjct:  290 EDIAILTGGKVISEEVGFKLENTTLDMLGQAKKITVDKDNTTIIDGFGAEADIQGRVKMIRAQIDETSSDYDREKLQERLAKLVGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVDEGIVPGGGVAYLRAMKVLENLQLAP-EQQFGVNVIKRALEEPIRQISQNAGVDGSIVVDK-VKNGKDAFGYNAADDVYVDMIEAGIIDPTKVSRSALQNAASVAGLMMTTEAMIADKPKEEGAMP 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_GEOBB (60 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 120/244 (49.18%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+EE+G  LE   LDMLG  KK+T+ KD+T I+DG G +  I+ R + IR+ I+ ++SDYD+EKLQERLAKL GGVAV+K+G A+E E+ EKK RV DAL+AT+AAV+EGIVPGGGV              A  +Q+ GV +I+ AL+ P+  I             K ++      GY+AA   YVDM+++GIIDP KV R+AL +AASV+ LM TTEA++ + PKE    P
Sbjct:  290 EDIAILTGGKVISEEVGFKLENTTLDMLGQAKKITVDKDNTTIIDGYGAEADIQGRVKMIRAQIDETSSDYDREKLQERLAKLVGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVDEGIVPGGGVAYLRALKVLEKLQLAP-EQQFGVNVIKRALEEPIRQISQNAGVDGSIVVDK-VKNGKDAFGYNAADDVYVDMIEAGIIDPTKVSRSALQNAASVAGLMMTTEAMIADKPKEEGAMP 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_AMOPS (60 kDa chaperonin OS=Amoeba proteus symbiotic bacterium GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 116/239 (48.54%), Postives = 163/239 (68.20%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LT G +I+EE+G  LE  +L+ LGT K++ ++K++T I+DG G    I  R  QIR+ +E ++SDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV               N DQ +G+ I++ A+++P+  I             K+ E  + + G++AA G+Y DMV+ GI+DP KV RTAL +AASV SLM TTE +V +LPK+
Sbjct:  289 QDIAILTNGQVISEEIGTSLETASLESLGTAKRIVVTKENTTIIDGEGKATEINARIAQIRAQMEETSSDYDREKLQERVAKLAGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKVLDGLKGDNADQDMGINILRRAIESPLRQIVANAGYESSVIVNKVAEHKD-NFGFNAATGQYGDMVEMGILDPTKVTRTALQNAASVRSLMLTTECMVADLPKK 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_SORC5 (60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 122/243 (50.21%), Postives = 165/243 (67.90%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A LT G +I EELG+ LE V +  LG  K V I KD+T I+ G G K  I+ R ++IR+ IEN+TSDYD+EKLQERLAKL GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               N +Q+ GV II+ A++ P+  I             K+ +  ++  GY+AA G+Y ++++ G+IDP+KV+R+AL +AASV+SLM TTEA++ E PKE K A
Sbjct:  290 KDIATLTDGQVIAEELGLKLENVTISDLGRAKTVIIDKDNTTIVGGQGKKDKIKARQQEIRAQIENTTSDYDREKLQERLAKLVGGVAVVKVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRAQSSLEKLK-VNDEQRFGVNIIRRAIEEPLRQISANAGEEGSIVVQKVRDGKDS-YGYNAASGDYGNLLEMGVIDPVKVVRSALQNAASVASLMLTTEALIAERPKEEKPA 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_RHOFD (60 kDa chaperonin 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groL1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 118/243 (48.56%), Postives = 162/243 (66.67%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG +I EE+GM LEKV L  LG+ K++ + K++T+I+DGAG    IE R +Q+R  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV              AN DQ  G++++  A++ P+  I              ++     + G++AA   Y DM++ GI+DP KV RTAL +AASV+SLM TTE +V E PK+   A
Sbjct:  290 EDIAILTGGKVIAEEVGMSLEKVTLADLGSAKRIEVGKENTIIIDGAGAAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQAVGTLKGANADQDAGIKLVMKAIEAPLREIVYNAGGEASVVVNAVM-AGKGNYGFNAANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTECMVSESPKDDSAA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPY (60 kDa chaperonin OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPS (60 kDa chaperonin OS=Yersinia pseudotuberculosis GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ORITI2.238e-5749.3760 kDa chaperonin OS=Orientia tsutsugamushi (strai... [more]
CH60_ORITB2.238e-5749.3760 kDa chaperonin OS=Orientia tsutsugamushi (strai... [more]
CH60_HELPG2.238e-5751.2360 kDa chaperonin OS=Helicobacter pylori (strain G... [more]
CH60_GEOSM2.238e-5749.1860 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH60_GEOBB2.238e-5749.1860 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH60_AMOPS2.238e-5748.5460 kDa chaperonin OS=Amoeba proteus symbiotic bact... [more]
CH602_SORC52.238e-5750.2160 kDa chaperonin 2 OS=Sorangium cellulosum (strai... [more]
CH601_RHOFD2.238e-5748.5660 kDa chaperonin 1 OS=Rhodoferax ferrireducens (s... [more]
CH60_YERPY2.922e-5748.1560 kDa chaperonin OS=Yersinia pseudotuberculosis s... [more]
CH60_YERPS2.922e-5748.1560 kDa chaperonin OS=Yersinia pseudotuberculosis G... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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