DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_MANSM (60 kDa chaperonin OS=Mannheimia succiniciproducens (strain MBEL55E) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 120/242 (49.59%), Postives = 162/242 (66.94%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N +Q +G+++   A+++P+  I               ++    + GY+A   +Y DM+  GI+DP KV R+AL  AAS++ LM TTEA+V ELPK+ K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKAAASLQGDNEEQNVGIKLALRAMESPLRQI-VANAGEEASVVASAVKNGEGNFGYNAGTEQYGDMIAMGILDPTKVTRSALQFAASIAGLMITTEAMVTELPKDDK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HELPY (60 kDa chaperonin OS=Helicobacter pylori GN=groL PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 124/244 (50.82%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+EELG+ LE   ++ LG   ++ I KD+T I+DG G    +++R  QI++ I ++TSDYDKEKLQERLAKLSGGVAV+K+G ASE E+ EKKDRV DAL+ATKAAVEEGIV GGG                + D+K+G +II  A+K P+  I             + +E+     G++A+ G+YVDM K GIIDPLKV R AL +A SVSSL+ TTEA V E+ KE K AP
Sbjct:  289 KDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHL--NLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNE-VEKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEI-KEEKAAP 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HELPH (60 kDa chaperonin OS=Helicobacter pylori (strain HPAG1) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 124/244 (50.82%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+EELG+ LE   ++ LG   ++ I KD+T I+DG G    +++R  QI++ I ++TSDYDKEKLQERLAKLSGGVAV+K+G ASE E+ EKKDRV DAL+ATKAAVEEGIV GGG                + D+K+G +II  A+K P+  I             + +E+     G++A+ G+YVDM K GIIDPLKV R AL +A SVSSL+ TTEA V E+ KE K AP
Sbjct:  289 KDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHL--NLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNE-VEKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEI-KEEKAAP 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 113/235 (48.09%), Postives = 163/235 (69.36%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 706
            +D+A+LTGG +ITE+LG+ LE  ++ MLG   KVT++K+DT I++GAGD K I+ R +QIR+ IEN+ SD+D+EKLQERLAKL+GGVAV+K+G A+E E+ EKK R+ DAL+AT+AAVEEG+V GGG             +    D+  GV I++ AL+ PV  I             K+  +D   +G+DA  GE+V+M++SGI+DP KV R+AL +AAS ++++ TTE +V +
Sbjct:  289 EDIAILTGGQVITEDLGLKLENADISMLGRAHKVTVTKEDTTIVEGAGDSKEIQNRIKQIRTQIENTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGLVAGGGTTLIDAIPALDELNLEG-DEATGVDIVRKALEAPVRLIADNAGYEGSVIVEKVKSEDK-GIGFDAYNGEFVNMIESGIVDPAKVTRSALQNAASAAAMLLTTECLVAD 521          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 118/244 (48.36%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+AVLTGG +I+EE G+ LE+  ++MLGT  KVT+SKD+T I++GAG K++I+ERC+QI++ I  + SDYD+EKLQERLAKLSGGVAVL +G ASE E+ EKKDRV DAL AT+AA+EEGIV GGGV               N D+  G+ II+ A++ P+  I             K+ E    D GY+A    Y +M  +G++DP KV R AL +AAS++ +  TTE ++VE  ++  E P
Sbjct:  290 EDIAVLTGGVVISEEKGLKLEQATIEMLGTADKVTVSKDNTTIVNGAGAKENIKERCDQIKAQIAATKSDYDREKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKGENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKVSE-GKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 118/244 (48.36%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+AVLTGG +I+EE G+ LE+  ++MLGT  KVT+SKD+T I++GAG K++I+ERC+QI++ I  + SDYD+EKLQERLAKLSGGVAVL +G ASE E+ EKKDRV DAL AT+AA+EEGIV GGGV               N D+  G+ II+ A++ P+  I             K+ E    D GY+A    Y +M  +G++DP KV R AL +AAS++ +  TTE ++VE  ++  E P
Sbjct:  290 EDIAVLTGGVVISEEKGLKLEQATIEMLGTADKVTVSKDNTTIVNGAGAKENIKERCDQIKAQIAATKSDYDREKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKGENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKVSE-GKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_AGGAC (60 kDa chaperonin OS=Aggregatibacter actinomycetemcomitans GN=groL PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 118/241 (48.96%), Postives = 159/241 (65.98%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K++ I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV               N +Q +G+++   A++ P+  I               ++    + GY+A   +Y DM+  GI+DP KV R+AL  AASV+ LM TTE +V ELPK+ K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRIVINKDNTTIIDGIGDEAQIQGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAAGRVVGLQGENEEQNVGIKLALRAMEAPLRQI-VANAGEEASVIASAVKNGEGNFGYNAGTEQYGDMIAMGILDPTKVTRSALQFAASVAGLMITTECMVTELPKDDK 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_ANADE (60 kDa chaperonin 1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 121/243 (49.79%), Postives = 158/243 (65.02%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A LTGG ++ EELG+ LE++ L  LG  K++T+ KD+T I+DG G K  IE R + IR  IE STS+YD+EKLQERLAKL GGVAV+ +G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV                 DQ+ GVQI+  AL+ P   I             K+LE      G++AA   + D+ K+G+IDP KV RTAL +AASV+SL+ TTEA+V + PK+   A
Sbjct:  290 KDIATLTGGTVVAEELGIKLEQLGLKDLGRAKRITVDKDNTTIVDGEGKKADIEARIKVIRGQIEESTSEYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVAYLRSLADLQKLDVGQGDQRFGVQIVVKALEWPARRIAENAGWDGPVVVNKILEGKGA-FGFNAATDTFEDLTKAGVIDPTKVSRTALQNAASVASLLLTTEAMVADKPKKKAAA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SERP5 (60 kDa chaperonin OS=Serratia proteamaculans (strain 568) GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.817e-57
Identity = 116/238 (48.74%), Postives = 161/238 (67.65%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            QD+A LTGG +I+EE+G++LEK  L+ LGT K++ I+KD T+I+DG G++ +I+ R  QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I               ++    + GY+AA  EY DM+  GI+DP KV R+AL  AASV+ LM TTE +V +LPK
Sbjct:  290 QDIATLTGGTVISEEIGLELEKTTLEDLGTAKRIVINKDTTIIIDGNGEEPAIQGRVSQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAASKLSELRGVNEDQNVGIKVALRAMESPLRQI-VLNCGEEPSVVANTVKAGEGNYGYNAATEEYGDMIAMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ORITS (60 kDa chaperonin OS=Orientia tsutsugamushi GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.817e-57
Identity = 118/239 (49.37%), Postives = 161/239 (67.36%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVN-LDMLGTCKKVTISKDDTVILDGAGD---KKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 706
            +D+A+LT G++ITE+LG+ LEKVN    LGT  +V ++KD T I+    +   +K +  RCEQIR AI+++TSDY+KEKLQERLAKL  GVAVLK+GGA+E E  E+KDRV DAL+AT+AAVEEGIVPGGGV               N DQ++G+ II+  L+ PV  I             +L +  + + G+DA   +YVDM+K+GI+DP KV+RTAL DA SV+SL+  T A++ +
Sbjct:  289 EDIAILTNGEVITEQLGIKLEKVNDTSKLGTANRVIVTKDHTTIVHDKNNSDIEKKVNSRCEQIREAIKDTTSDYEKEKLQERLAKLRNGVAVLKVGGATEVEQKERKDRVEDALHATRAAVEEGIVPGGGVALFYASRVLDSLKFDNEDQRVGINIIKKVLEAPVRQIVKNAGGKEDVVVNELSKSTDKNRGFDARTMQYVDMIKAGIVDPTKVVRTALQDAFSVASLVIATSAMITD 527          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MANSM2.922e-5749.5960 kDa chaperonin OS=Mannheimia succiniciproducens... [more]
CH60_HELPY2.922e-5750.8260 kDa chaperonin OS=Helicobacter pylori GN=groL P... [more]
CH60_HELPH2.922e-5750.8260 kDa chaperonin OS=Helicobacter pylori (strain H... [more]
CH60_HALOH2.922e-5748.0960 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_BACFR2.922e-5748.3660 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN2.922e-5748.3660 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]
CH60_AGGAC2.922e-5748.9660 kDa chaperonin OS=Aggregatibacter actinomycetem... [more]
CH601_ANADE2.922e-5749.7960 kDa chaperonin 1 OS=Anaeromyxobacter dehalogena... [more]
CH60_SERP53.817e-5748.7460 kDa chaperonin OS=Serratia proteamaculans (stra... [more]
CH60_ORITS3.817e-5749.3760 kDa chaperonin OS=Orientia tsutsugamushi GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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