DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SERRU (60 kDa chaperonin (Fragment) OS=Serratia rubidaea GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 118/241 (48.96%), Postives = 159/241 (65.98%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A LT G +I+EE+GM+LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A++ P+  I              +   + +  GY+A   EY DM+  GI+DP KV R+AL  AASV+ LM TTE +V +LPKE K
Sbjct:  290 QDIATLTAGTVISEEIGMELEKATLEDLGQAKRVVINKDTTIIIDGIGDEATIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIAELKGDNEDQNVGIKVALRAMEAPLRQIVINAGEEASVIANSVKAGEGS-YGYNAYSEEYGDMIGMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKEDK 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEA7 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain PA7) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 116/239 (48.54%), Postives = 163/239 (68.20%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G+ LE   L+ LG  K+V I+K++T I+DGAG +  IE R  QIR  IE +TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N +Q +G+ +++ A++ P+  I             K ++Q + + G++AA G Y DM++ GI+DP KV R+AL  AAS+  LM TTEA+V E+ ++
Sbjct:  290 QDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKGDNEEQNVGIALLRRAVEAPLRQIVANAGDEPSVVVDK-VKQGSGNYGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVED 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_LACS1 (60 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 117/238 (49.16%), Postives = 162/238 (68.07%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            QD+A LTG  +IT++LG+ L+   ++ LG+  KVT++K++T I++GAGDK  I ER EQI+  I  +TSD+D+EKLQERLAKLSGGVAV+K+G A+E E+ E+K R+ DALNAT+AAVEEG VPGGG                  D + G+ I++ AL+ PV  I             KL EQ    +G++AA  E+VDMV++GI+DP KV R+AL +AASVS+L+ TTEA+V + P+
Sbjct:  288 QDIATLTGATVITDDLGLQLKDTTVEQLGSAGKVTVTKENTTIVEGAGDKDKIAERVEQIKKQISETTSDFDREKLQERLAKLSGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGFVPGGGTALVNVIGKVAALEEEG-DVQTGINIVKRALEEPVRQIAENAGLEGSVIVEKLKEQ-KPGVGFNAATNEWVDMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPE 523          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAES2 (60 kDa chaperonin OS=Haemophilus somnus (strain 2336) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 119/242 (49.17%), Postives = 160/242 (66.12%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N DQ +G+++   A++ P+  I               ++    + GY+A   +Y DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LPKE K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAATKVATTLKGDNEDQDVGIKLALRAMEAPLRQI-VTNAGEEASVVASAVKNGEGNFGYNAGTEQYGDMIAMGILDPTKVTRSALQFAASIAGLMVTTECMVADLPKEEK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAES1 (60 kDa chaperonin OS=Haemophilus somnus (strain 129Pt) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 119/242 (49.17%), Postives = 160/242 (66.12%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N DQ +G+++   A++ P+  I               ++    + GY+A   +Y DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LPKE K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAATKVATTLKGDNEDQDVGIKLALRAMEAPLRQI-VTNAGEEASVVASAVKNGEGNFGYNAGTEQYGDMIAMGILDPTKVTRSALQFAASIAGLMVTTECMVADLPKEEK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_FERNB (60 kDa chaperonin OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 114/244 (46.72%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGV-XXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+LTGG + +EE+G++LE + L  LG    V + KD+T+I+ G G  + I++R  QI++ IE +TS+Y+KE LQER+AKL+GGVAV+K+G A+E E+ EKK R+ DAL+AT+AAVEEGIVPGGG+             +    D+K+G QI+ NAL+ P+  I              +L +D+   G+DA KGEY +M + GIIDP KV R+AL +AAS++ ++ TTE +VVE P+E K A
Sbjct:  288 QDIAILTGGIVASEEVGINLEDLTLQDLGRADVVRVKKDETIIVGGKGKPEEIKKRVAQIKAQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKVLEPVLNELTGDEKLGAQIVYNALEAPIRQIALNAGYDGAIIIHNVLSKDDVAYGFDALKGEYCNMYERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 113/239 (47.28%), Postives = 165/239 (69.04%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG++I+EELG +++ V LDMLGT + + ++K++T I++G G K  IE+R  QI+  IE +TS++DKEKLQERLAK++GGVAV+K+G A+E E+ E+K R+ DAL ATKAAVEEGIV GGG             +  N + ++G+ II+ AL+ PV  I             K++      +G+DA +GEYV+MV+ GI+DP KV R+AL +AASV+S   TTE +V E+P++
Sbjct:  288 RDIAILTGGEVISEELGREIKDVTLDMLGTAESIKVTKENTTIVNGKGSKAEIEDRIGQIKRQIEETTSEFDKEKLQERLAKIAGGVAVVKVGAATETELKERKLRIEDALAATKAAVEEGIVAGGGTAYLRAIKEVEKLTDNNSEIRLGIAIIRRALEEPVRQIASNAGLEGSVIIDKIM-NGQEGMGFDALEGEYVNMVQKGIVDPAKVTRSALQNAASVASTFLTTECVVAEIPEK 525          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BRECH (60 kDa chaperonin OS=Brevibacillus choshinensis GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 113/241 (46.89%), Postives = 167/241 (69.29%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A LTGG++ITEELG+DL+   L+ LG   K+ ++K++T +++GAGDK +IE R  QIR  IE++TSD+D+EKLQERLAKL+GGVAV+K+G A+E E+ EKK R+ DALN+T+AAVEEGIVPGGG                  ++ +GV I+  +L+ PV  I             + L+++   +G++AA  EYV+M+++GI+D  KV R+AL +AASV+++  TTEA++ + P+E K
Sbjct:  288 QDIAALTGGEVITEELGLDLKSTKLEQLGRAGKIVVTKENTTVVEGAGDKANIESRVAQIRQQIEDTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKLRIEDALNSTRAAVEEGIVPGGGTTLINAIKAVEGVKVEG-EEAVGVHIVLRSLEEPVRQIAANAGLEGSVIVER-LKKEPVGIGFNAATEEYVNMLEAGIVDAAKVTRSALSNAASVAAMFLTTEAVIADKPEENK 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 116/244 (47.54%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+EE G+ LE+  ++MLGT  KVT+SKD T I++GAG K++I+ERC+QI++ I  + SDYD+EKLQERLAKLSGGVAVL +G ASE E+ EKKDRV DAL AT+AA+EEGI+PGGGV               N D+  G+ II+ A++ P+  I             K+ E    D GY+A    Y ++  +G++DP KV R AL +AAS++ +  TTE ++VE  ++  E P
Sbjct:  290 EDIAILTGGVVISEEKGLKLEQATIEMLGTADKVTVSKDYTTIVNGAGVKENIKERCDQIKAQIVATKSDYDREKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALRATRAAIEEGIIPGGGVAYIRAIDSLEGMKGDNADETTGIGIIKRAIEEPLREIVANAGKEGAVVVQKVRE-GKGDFGYNARTDVYENLHAAGVVDPAKVARVALENAASIAGMFLTTECVIVEKKEDKPEMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HELP2 (60 kDa chaperonin OS=Helicobacter pylori (strain P12) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 123/244 (50.41%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+EELG+ LE   ++ LG   ++ I KD+T I+DG G    +++R  QI++ I ++TSDYDKEKLQERLAKLSGGVAV+K+G ASE E+ EKKDRV DAL+ATKAAVEEGIV GGG                + D+K+G +II  A+K P+  I             + +E+     G++A+ G+YVDM K GIIDPLKV R AL +A SVSSL+ TTEA V E+ KE K  P
Sbjct:  289 KDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVVQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHL--NLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNE-VEKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEI-KEEKATP 528          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SERRU8.502e-5748.9660 kDa chaperonin (Fragment) OS=Serratia rubidaea ... [more]
CH60_PSEA78.502e-5748.5460 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_LACS18.502e-5749.1660 kDa chaperonin OS=Lactobacillus salivarius subs... [more]
CH60_HAES28.502e-5749.1760 kDa chaperonin OS=Haemophilus somnus (strain 23... [more]
CH60_HAES18.502e-5749.1760 kDa chaperonin OS=Haemophilus somnus (strain 12... [more]
CH60_FERNB8.502e-5746.7260 kDa chaperonin OS=Fervidobacterium nodosum (str... [more]
CH60_CLOBO8.502e-5747.2860 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH60_BRECH8.502e-5746.8960 kDa chaperonin OS=Brevibacillus choshinensis GN... [more]
CH60_BACTN8.502e-5747.5460 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH60_HELP21.110e-5650.4160 kDa chaperonin OS=Helicobacter pylori (strain P... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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