DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAMD5 (60 kDa chaperonin OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 122/244 (50.00%), Postives = 159/244 (65.16%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA--NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLE-QDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+AVLT G +I+EE G  LEK   + LG  K+V I+KD T I+DGAG+K  IE R + IR  IEN+TSDYDKEKLQER+AKLSGGVAV+K+G  +E  + EKK RV DAL AT+AAVEEG+VPGGGV            S    N DQ +G+++   A+++P+  I             K+ E + N + GY+A    Y DM++ GI+DP KV R+AL  AAS++ LM TTE +V +LPKE K
Sbjct:  290 QDIAVLTHGHVISEETGDSLEKATQENLGKAKRVVITKDATTIIDGAGEKSRIEARVQNIRKQIENATSDYDKEKLQERVAKLSGGVAVIKVGAPTEIAMKEKKARVEDALQATRAAVEEGVVPGGGVALIRVASKIANSSLKGDNEDQNVGIRVALRAMESPLRQIVVNAGEEASVIANKVKENKGNDNYGYNAQTEAYGDMIEMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPKEEK 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAEIN (60 kDa chaperonin OS=Haemophilus influenzae GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 119/242 (49.17%), Postives = 161/242 (66.53%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N +Q +G+++   A++ P+  I               ++    + GY+A   +Y DM++ GI+DP KV R+AL  AASV+ LM TTE +V +LPK+ K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALVRAAAKVAASLKGDNEEQNVGIKLALRAMEAPLRQI-VTNAGEEASVVASAVKNGEGNFGYNAGTEQYGDMIEMGILDPTKVTRSALQFAASVAGLMITTECMVTDLPKDDK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAEIG (60 kDa chaperonin OS=Haemophilus influenzae (strain PittGG) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 119/242 (49.17%), Postives = 161/242 (66.53%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N +Q +G+++   A++ P+  I               ++    + GY+A   +Y DM++ GI+DP KV R+AL  AASV+ LM TTE +V +LPK+ K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALVRAAAKVAASLKGDNEEQNVGIKLALRAMEAPLRQI-VTNAGEEASVVASAVKNGEGNFGYNAGTEQYGDMIEMGILDPTKVTRSALQFAASVAGLMITTECMVTDLPKDDK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAEIE (60 kDa chaperonin OS=Haemophilus influenzae (strain PittEE) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 119/242 (49.17%), Postives = 161/242 (66.53%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N +Q +G+++   A++ P+  I               ++    + GY+A   +Y DM++ GI+DP KV R+AL  AASV+ LM TTE +V +LPK+ K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALVRAAAKVAASLKGDNEEQNVGIKLALRAMEAPLRQI-VTNAGEEASVVASAVKNGEGNFGYNAGTEQYGDMIEMGILDPTKVTRSALQFAASVAGLMITTECMVTDLPKDDK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAEI8 (60 kDa chaperonin OS=Haemophilus influenzae (strain 86-028NP) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 119/242 (49.17%), Postives = 161/242 (66.53%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N +Q +G+++   A++ P+  I               ++    + GY+A   +Y DM++ GI+DP KV R+AL  AASV+ LM TTE +V +LPK+ K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALVRAAAKVAASLKGDNEEQNVGIKLALRAMEAPLRQI-VTNSGEEASVVASAVKNGEGNFGYNAGTEQYGDMIEMGILDPTKVTRSALQFAASVAGLMITTECMVTDLPKDDK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BUCBP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 118/241 (48.96%), Postives = 158/241 (65.56%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+++LT G +I+EEL M+LEK  L+ LG  K+V I+KD T I+ G G+K +I+ R  QIR  I+ +TSDYDKEKL ERLAKLSGGVAVLK+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQ +G+++   A++ P+  I               ++    + GY+AA  EY DM+  GI+DP KV R+AL  A+SV+ LM TTE +V +LPK+ K
Sbjct:  290 QDISILTSGSVISEELAMELEKSTLEDLGQAKRVVINKDTTTIIGGIGEKYNIQSRISQIRQQIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVAAKISNIVGQNEDQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNN-VKDGKGNYGYNAATDEYGDMISFGILDPTKVTRSALQYASSVAGLMITTECMVTDLPKDEK 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ACIAC (60 kDa chaperonin OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.110e-56
Identity = 120/244 (49.18%), Postives = 161/244 (65.98%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I EE+G+ LEKV L  LG  K++ + K++T I+DGAG    IE R +QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV               N DQ  G+++I  A++ P+  I              +L     + G++AA   Y DM++ GI+DP KV RTAL +AASV+SL+ TTEA+V E PK+   AP
Sbjct:  290 EDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTTIIDGAGAAADIEARVKQIRIQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQAAGDIKGDNPDQDAGIKLILKAIEAPLREIVANAGGEPSVVVNAVL-NGKGNYGFNAANDTYGDMLEMGILDPTKVTRTALQNAASVASLLLTTEAMVAEAPKDDAPAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.450e-56
Identity = 123/244 (50.41%), Postives = 160/244 (65.57%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG++++EELG  LE   L  LG    V I KD+T I++GAG+K +I+ R  QI++ I  +TSDYDKEKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+ATKAAVEEGIV GGG              +   D+ IG  I++ AL  P+  I              +    + + G++AA GEYVDM K+GIIDP+KV R AL +A SV+SL+ TTEA + EL KE K  P
Sbjct:  289 EDIAILTGGEVVSEELGRTLESATLSDLGQASSVIIDKDNTTIVNGAGEKSAIDARIIQIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAAFIKAGAKVDLNLSG--DEAIGADIVRRALTAPLRQIAENAGFDAGVVANSVSVSKDDNYGFNAATGEYVDMFKAGIIDPVKVERIALQNAVSVASLLLTTEATISEL-KEDKPMP 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_TREPR (60 kDa chaperonin OS=Tremblaya princeps GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.450e-56
Identity = 115/244 (47.13%), Postives = 158/244 (64.75%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +++EE G+ LEKV+L  LG  K+  ++KD T I+DGAGD K+I  R + IR  IE + SDYDKEKLQER+AKL+GGVAV+++G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               N DQ  G++I+  A++ P+  I              +    +   GY+AA   Y D++ +G++DP KV R+AL +AASV+ LM TT+  V + PK  + AP
Sbjct:  290 QDIAILTGGHVVSEETGLSLEKVSLPELGQAKRAEVAKDTTTIIDGAGDAKAINARIKHIRLQIEEAASDYDKEKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARNAISNLRCDNPDQDAGIRIVLRAMEEPLRQIVANGGEEASVVASSVASGKSISYGYNAAMRVYGDLMDAGVVDPTKVTRSALQNAASVAGLMLTTDVAVCDSPKREEAAP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHELP (60 kDa chaperonin OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.450e-56
Identity = 117/239 (48.95%), Postives = 160/239 (66.95%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KDDT I+DG G+++ I  R  QI+   E STSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV              AN DQK GV I   A++ P+  I               ++  + + GY+A    Y DM++ GI+DP KV R+AL  A+S++ LM TTEA+V ++P+E
Sbjct:  290 QDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDDTTIIDGTGEQEQISARVAQIKIQAEESTSDYDREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIGELDVANEDQKHGVTIALRAMEAPLRQIATNAGEEASVVANN-VKNGSGNYGYNAGSDVYGDMLEMGILDPTKVTRSALQFASSIAGLMITTEAMVGDVPQE 527          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_HAMD51.110e-5650.0060 kDa chaperonin OS=Hamiltonella defensa subsp. A... [more]
CH60_HAEIN1.110e-5649.1760 kDa chaperonin OS=Haemophilus influenzae GN=gro... [more]
CH60_HAEIG1.110e-5649.1760 kDa chaperonin OS=Haemophilus influenzae (strai... [more]
CH60_HAEIE1.110e-5649.1760 kDa chaperonin OS=Haemophilus influenzae (strai... [more]
CH60_HAEI81.110e-5649.1760 kDa chaperonin OS=Haemophilus influenzae (strai... [more]
CH60_BUCBP1.110e-5648.9660 kDa chaperonin OS=Buchnera aphidicola subsp. Ba... [more]
CH60_ACIAC1.110e-5649.1860 kDa chaperonin OS=Acidovorax avenae subsp. citr... [more]
CH60_WOLRE1.450e-5650.4160 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]
CH60_TREPR1.450e-5647.1360 kDa chaperonin OS=Tremblaya princeps GN=groL PE... [more]
CH60_SHELP1.450e-5648.9560 kDa chaperonin OS=Shewanella loihica (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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