DC900308

Overview
NameDC900308
Unique NameDC900308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1050..1711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_HELHP (S-adenosylmethionine synthetase OS=Helicobacter hepaticus GN=metK PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK++VA+G+  + IVQV+YAIGV EP+S+ VD+ GTGK+ D ++ + VK  F   P  +  +LDL R     + KTAAYGHFGR+  +F+WE
Sbjct:  283 AKNLVASGVCDKAIVQVAYAIGVVEPVSILVDTQGTGKVEDSKLTECVKAVFRLTPKGIIESLDLLR---PIYRKTAAYGHFGRELNEFSWE 371
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_ENT38 (S-adenosylmethionine synthetase OS=Enterobacter sp. (strain 638) GN=metK PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKLPTEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPY (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPS (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPP (S-adenosylmethionine synthetase OS=Yersinia pestis (strain Pestoides F) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPN (S-adenosylmethionine synthetase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPG (S-adenosylmethionine synthetase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPE (S-adenosylmethionine synthetase OS=Yersinia pestis GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPB (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_YERPA (S-adenosylmethionine synthetase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369
The following BLAST results are available for this feature:
BLAST of DC900308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_HELHP5.385e-1748.91S-adenosylmethionine synthetase OS=Helicobacter he... [more]
METK_ENT385.385e-1751.09S-adenosylmethionine synthetase OS=Enterobacter sp... [more]
METK_YERPY7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]
METK_YERPS7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]
METK_YERPP7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pestis... [more]
METK_YERPN7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pestis... [more]
METK_YERPG7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pestis... [more]
METK_YERPE7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pestis... [more]
METK_YERPB7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]
METK_YERPA7.033e-1752.17S-adenosylmethionine synthetase OS=Yersinia pestis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900308 VSS Citrus sinensis cDNA clone VS28659 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900308 ID=DC900308; Name=DC900308; organism=Citrus sinensis; type=EST; length=662bp
GCTGGAGCCATGTGCGGGCTTCTCTGAAAGACCTACTAGTGAAGAGTGTG
CATCATGTAGCAGCTGCTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAG
GTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTG
TTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCTC
AAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCAA
TTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCT
ATGGACATTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAG
CCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAA
ACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTT
GAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTTC
AGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTCTTCTTTCCCC
ACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCACTGTTGTGTAG
TGATATNGATTGAGAATTTTGCTCAACTGGTGCCTGGAATTAGTAAAATT
CTTCCTTTTGCT
back to top