DC900307

Overview
NameDC900307
Unique NameDC900307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:162..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_STRFR (S-adenosylmethionine synthetase OS=Streptomyces fradiae GN=metK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.263e-44
Identity = 103/191 (53.93%), Postives = 120/191 (62.83%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR--------PED----IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            M   LFTSESV EGHPDK+ D+ISD VLDA L +DP ++VA ET   T  V + GE+TT A     ++VRDT  SIG+ S   G D   C V V+I  QSPDIA+GV   + +R        P D     GAGDQG MFGYA DET E MPL   LA +L  RL+EVRKN T  +LRPDGKTQVT EY  D
Sbjct:    1 MSRRLFTSESVTEGHPDKIADRISDTVLDALLARDPRARVAVETLITTGQVHIAGEVTTTAYAPIAQLVRDTVLSIGYDSSAKGFDGASCGVSVSIGAQSPDIARGVDTAYERRGGGTAPGGPGDELDRQGAGDQGLMFGYACDETPELMPLPINLAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGD 191          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_STAS1 (S-adenosylmethionine synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=metK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.263e-44
Identity = 93/179 (51.96%), Postives = 117/179 (65.36%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            LFTSESV EGHPDK+ DQ+SDA+LD  L+ DP ++VACET   T M ++ GEI+T   VD  K+VR+T + IG+     G D+    VL  I++QSPDIAQGV      R        E  GAGDQG MFGYAT+ET  +MPL   L+ +L  RL++VRK+    +LRPDGK QVT EY
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKEIGYTRAKFGYDSQTMAVLTAIDEQSPDIAQGVDTALEYRDEASEAEIEATGAGDQGLMFGYATNETDTYMPLPIFLSHQLAKRLSDVRKDEILKYLRPDGKVQVTVEY 185          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.263e-44
Identity = 92/172 (53.49%), Postives = 117/172 (68.02%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            LFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VACET  KT  V++ GEITT A +D E+IVRDT   IG+   D+G D + C V+  + +QSP+IAQGV       PE+ GAGDQG MFGYA++ET   MP     A +L  R +E+R+     WLRPD K Q+T +Y
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVILAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQGAGDQGLMFGYASNETEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQITLKY 174          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_LEPIN (S-adenosylmethionine synthetase OS=Leptospira interrogans GN=metK PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.263e-44
Identity = 94/179 (52.51%), Postives = 123/179 (68.72%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV---HGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            ++ F+FTSESV EGHPDK+CDQISDAVLDA LEQDP+S+VACET   TN+V++ GEIT+K KVD ++I R+  R IG+    +G DAD   V  ++  QSPDI+QGV    G F ++    GAGDQG MFG+A +ET E MP+    + +L   L  +R  +   +LRPD K+QVT EY
Sbjct:    3 LKDFIFTSESVGEGHPDKVCDQISDAVLDAYLEQDPKSRVACETLVTTNLVVIAGEITSKGKVDAQEIARNVIRDIGYNDITMGFDADFAVVSAHVHAQSPDISQGVTEGEGLFKEQ----GAGDQGLMFGFAINETPELMPMPIYYSHELVKHLAGLRHGNKLKFLRPDAKSQVTVEY 177          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_LEPIC (S-adenosylmethionine synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=metK PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.263e-44
Identity = 94/179 (52.51%), Postives = 123/179 (68.72%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV---HGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            ++ F+FTSESV EGHPDK+CDQISDAVLDA LEQDP+S+VACET   TN+V++ GEIT+K KVD ++I R+  R IG+    +G DAD   V  ++  QSPDI+QGV    G F ++    GAGDQG MFG+A +ET E MP+    + +L   L  +R  +   +LRPD K+QVT EY
Sbjct:    3 LKDFIFTSESVGEGHPDKVCDQISDAVLDAYLEQDPKSRVACETLVTTNLVVIAGEITSKGKVDAQEIARNVIRDIGYNDITMGFDADFAVVSAHVHAQSPDISQGVTEGEGLFKEQ----GAGDQGLMFGFAINETPELMPMPIYYSHELVKHLAGLRHGNKLKFLRPDAKSQVTVEY 177          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_SYNFM (S-adenosylmethionine synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 93/179 (51.96%), Postives = 120/179 (67.04%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH---GHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            M  FLFTSESV EGHPDK+ DQISD++LDA + +D  ++VACET   T +  V GEITT + VD   I+R T + IG+    +G D   C V+ +I++QSPDIAQGV+   G F    E+ GAGDQG MFG+A +ET  FMP+    A ++  +L EVRKN    +LRPDGK+QVT EY
Sbjct:    3 MSNFLFTSESVTEGHPDKVADQISDSILDAIITEDKTARVACETLVTTGLAFVAGEITTSSWVDIPDIIRSTIKGIGYNDSSMGFDWSTCAVITSIDKQSPDIAQGVNPGEGLF----EEQGAGDQGLMFGFACNETPVFMPMPIYYAHRITRKLAEVRKNGVLEFLRPDGKSQVTVEY 177          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_MYCPA (S-adenosylmethionine synthetase OS=Mycobacterium paratuberculosis GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 102/185 (55.14%), Postives = 114/185 (61.62%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI-------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            LFTSESV EGHPDK+CD ISD+VLDA L QDP S+VA ET   T  V V GE+TT AK    D    VR+    IG+ S D G D   C V + I  QSPDIAQGV      R E         GAGDQG MFGYA  +T E MPL   LA +L  RLTEVRK+    +LRPDGKTQVT EY +D
Sbjct:    7 LFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAIKDTPEMMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYEDD 191          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_MYCA1 (S-adenosylmethionine synthetase OS=Mycobacterium avium (strain 104) GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 102/185 (55.14%), Postives = 115/185 (62.16%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI-------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            LFTSESV EGHPDK+CD ISD+VLDA L QDP S+VA ET   T  V V GE+TT AK    D    VR+    IG+ S D G D   C V + I  QSPDIAQGV      R E         GAGDQG MFGYA ++T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVT E+ +D
Sbjct:    7 LFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFEDD 191          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_FRASN (S-adenosylmethionine synthetase OS=Frankia sp. (strain EAN1pec) GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 99/184 (53.80%), Postives = 116/184 (63.04%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            M T LFTSESV EGHPDK+ DQ+SD++LDA L+ DP+S+VA ET   T  V V GE+TTK  VD   +VR+    IG+ S   G D   C V V+I  QSPDIAQGV      R E          GAGDQG MFG+A DET E MPL   LA +L  RL+ VRK+    +LRPDGKTQVT EY
Sbjct:    1 MATRLFTSESVTEGHPDKIADQVSDSILDAMLKDDPKSRVAVETMITTGQVHVAGEVTTKTYVDIASVVRERILEIGYDSSKKGFDGASCGVSVSIGSQSPDIAQGVDTAHEARVEGSTEDDLDRQGAGDQGLMFGFACDETPELMPLPIALAHRLARRLSAVRKDGQVGYLRPDGKTQVTIEY 184          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_BURTA (S-adenosylmethionine synthetase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 95/173 (54.91%), Postives = 117/173 (67.63%), Query Frame = 3
Query:   96 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            +LFTSESV+EGHPDK+ DQISDA+LDA L QD  S+VA ET   T +V++ GEITT A +DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R   +R++    WLRPD K+QVT  Y
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNN-LDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRY 176          
The following BLAST results are available for this feature:
BLAST of DC900307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STRFR1.263e-4453.93S-adenosylmethionine synthetase OS=Streptomyces fr... [more]
METK_STAS11.263e-4451.96S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_PSYA21.263e-4453.49S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_LEPIN1.263e-4452.51S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_LEPIC1.263e-4452.51S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_SYNFM1.650e-4451.96S-adenosylmethionine synthetase OS=Syntrophobacter... [more]
METK_MYCPA1.650e-4455.14S-adenosylmethionine synthetase OS=Mycobacterium p... [more]
METK_MYCA11.650e-4455.14S-adenosylmethionine synthetase OS=Mycobacterium a... [more]
METK_FRASN1.650e-4453.80S-adenosylmethionine synthetase OS=Frankia sp. (st... [more]
METK_BURTA1.650e-4454.91S-adenosylmethionine synthetase OS=Burkholderia th... [more]

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Properties
Property NameValue
Genbank descriptionDC900307 VSS Citrus sinensis cDNA clone VS28659 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900307 ID=DC900307; Name=DC900307; organism=Citrus sinensis; type=EST; length=635bp
TTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAGAT
CTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCT
ATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACC
AGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTGAGAGC
AAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGG
AGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACA
CTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACGCCGAT
CACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATTGCCCA
GGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTG
ACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAATTTATG
CCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGT
TAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGG
TCACTGNTGAGTACTACAACGACAATGGTGCCATG
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