DC900300

Overview
NameDC900300
Unique NameDC900300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1384 contig Csv1_Contig1384:801..1435. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L  ED+RW W +F ++ S A+YV++YS  Y  F  + + G      Y GY  + + A+ +  G IG++ +  FV  ++++VKID
Sbjct:  503 TYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589          
The following BLAST results are available for this feature:
BLAST of DC900300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TM9S3_HUMAN5.358e-1135.23Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900300 VSS Citrus sinensis cDNA clone VS28647 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900300 ID=DC900300; Name=DC900300; organism=Citrus sinensis; type=EST; length=634bp
GTCTTTGGTTTTCTGCTGATAGTTCTTTTGTTGCTGGTTGTTGTTTGCGC
TGAAGTGTCTGTGGTCCTAACATACATGCATCTTTGTGTGGAGGATTGGC
GTTGGTGGTGGAAGGCTTTCTTTGCTTCAGGATCAGTTGCACTGTATGTG
TTCCTGTACTCTATCAACTATTTGGTATTTGACCTGCAGAGTTTGAGTGG
ACCCGTCTCTGCTCTACTATATCTTGGTTATTCATTAATCATGGCAGTCG
CAATCATGTTGGCAACCGGCACCATTGGCTTCCTTACGTCTTTTTACTTC
GTCCATTACCTTTTCTCGTCTGTAAAGATTGACTGAAAAATTGTGTTTGT
GAATCAATCTTCATCGACCAGGTAGAGAAGACTCCAGTACGTAGGAAGAG
GGAGTTTTCTTGGTTCAGCCTTCCTTTTGATAGATTTAGAGATTATGATA
TGCTGTCTCATTCCCCTATATTGTTGTTCTTGTTTTTCCTATTTTACTAC
TTTTGAGCATCATTTTGGATTACCTCTCTCAGTTTACATTGACTGTTCTA
CAAAATTGTAATTTGTTGGTTTTGCTCTCCTTGTACTTTCGTTAGCTTTA
TCATTGAAGAGAATTTAAATAGTCTTTTTCTTTA
back to top