DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.967e-99
Identity = 166/231 (71.86%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 695
            Y+GG W +AHATFYGG DASGTM GACGYGNLYSQGYG NTAALSTALFNNGLSCGACFEI+C N+  WC  GS  I+VTATNFCPPN ALP++ GGWCNPP+ HFDL+ P+F +IA+YRAGIVPV+YRRVPC ++GGIRFTING  YFNLVL+TNV GAGD+    VKGSRTGW +MSRNWGQNWQSN+ L GQSLSF+V  SD ++  S N+  A W FGQTF G   R
Sbjct:   22 YAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGS--IVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.107e-98
Identity = 165/229 (72.05%), Postives = 188/229 (82.10%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 695
            GG W +AHATFYGG DASGTM GACGYGNLYSQGYG +TAALSTALFNNGLSCG+CFEI+C N+  WC  GS  I+VTATNFCPPN AL ++NGGWCNPP  HFDLA P+F +IA+YRAGIVPVSYRRVPCR++GGIRFTING  YFNLVL+TNV GAGD+    +KGSRT W +MSRNWGQNWQSN+ L GQ+LSF+V  SD R+  S+N  PA W +GQTF G  FR
Sbjct:   23 GGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGS--IVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.930e-97
Identity = 162/231 (70.13%), Postives = 188/231 (81.39%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 695
            YS G W +A ATFYGG+DASGTM GACGYGNLYSQGYG NTAALSTALFN G SCGACF+IKC ++P WC  G+  I VT TNFCPPN+A  ++ GGWCNPP+ HFDLA P+FL+IA+Y+AG+VPV YRRV CR+KGGIRFTING  YFNLVL+TNVAGAGD++ V++KG+ T W SMSRNWGQNWQSNA L GQ+LSF+V  SD R+  S N  P NW FGQT+ GK FR
Sbjct:   25 YSSG-WVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGT--ITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.654e-94
Identity = 159/228 (69.74%), Postives = 184/228 (80.70%), Query Frame = 3
Query:   12 GPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRT-GWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            G WQ  HATFYGG DASGTM GACGYGNLY QGYG NTAALSTALFNNGL+CGAC+E+KC ++P WC   +  I VTATNFCPPN  L +DNGGWCNPP  HFDLA P FL+IA+YRAGIVPVS+RRVPC KKGGIRFTING  YFNLVL++NV GAGD+  V++KGS+T  W +MSRNWGQNWQSN+ +  QSLSF+V  SD R+  S ++ P+NWQFGQT+ G  F
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGST--ITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 3.684e-94
Identity = 160/228 (70.18%), Postives = 188/228 (82.46%), Query Frame = 3
Query:   12 GPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            G W+  HATFYGG+DASGTM GACGYGNL+SQGYG+ TAALSTALFN+G  CGACFE++C ++P WC  GS  I+V+ATNFCPPN+AL +DNGGWCNPP  HFDLA P FL+IA+YRAGIVPV++RRVPC K GGIRFTING  YF+LVL+TNV GAGDI  V++KGS+T  W SMSRNWGQNWQSN  L GQSLSF+V  SD R+  S+++VP +WQFGQTF G  F
Sbjct:   30 GGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGS--IIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.828e-93
Identity = 164/230 (71.30%), Postives = 182/230 (79.13%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSP-SILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRT-GWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            GG W SAHATFYGG DASGTM GACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE++C       HS  P S++VTATNFCPPN ALPSD+GGWCNPPR HFD++ P+F +IA ++AGIVPVSYRRV C+KKGGIRFTING  YFNLVLVTNV GAGD+  V VK  R+  W ++SRNWGQNWQS A+L GQ+LSFRV   D RS  S N VP  W FGQTF G  F
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQF 290          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 6.947e-93
Identity = 160/234 (68.38%), Postives = 182/234 (77.78%), Query Frame = 3
Query:   12 GPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAW-CHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG------WMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            G WQ  HATFYGG DASGTM GACGYGNLYSQGYG +TAALSTALFN GLSCG+C+E++CA +    C  G  ++ VTATNFCPPNYALPSD GGWCNPPR HFDLA P FL+IA + AGIVPVS+RRV C +KGG+RFT+NG  YFNLVLVTNV GAGD+  + VKGS +G      W  MSRNWGQNWQSNA L G++LSFRV A D RS T  ++ PA WQFGQTF G+ F
Sbjct:   26 GQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGRQF 259          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.602e-89
Identity = 155/228 (67.98%), Postives = 177/228 (77.63%), Query Frame = 3
Query:   12 GPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 695
            GPW +AHATFYGG DASGTM GACGYGNLYSQGYG+ TAALSTALF+ GLSCGACFE+ C N+P WC  G  SI+VTATNFCPP        GG C+PP  HFDL+ P++ KIA Y++GI+PV YRRV C++ GGIRFTING  YFNLVLVTNV GAGD+  V++KGSRT W  MSRNWGQNWQSN+ L GQSLSF V  SDRRS  S+N+ P  W FGQT+ G  FR
Sbjct:   36 GPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGR-SIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.732e-89
Identity = 155/225 (68.89%), Postives = 175/225 (77.78%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            W S  ATFYGGSDASGTM GACGYGNLYS GYG +TAALSTALFNNG SCGACFE++C    + C +G+  + VTATN CPPNYAL  D GGWCNPPRPHFD+A P F +IA+ RAG+VPV YRRV C K+GGIRFTI G  YFNLVLVTNV GAGD+  V+VKGSR+GW +MS NWG NWQ+ A L GQ LSFRV ASD R+ TS N+ P+ W FGQTF G  F
Sbjct:   27 WSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGT--VAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.832e-85
Identity = 148/227 (65.20%), Postives = 174/227 (76.65%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEP--AWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            ++   W  A ATFYGGSDASGTM GACGYG+LYS GYG NTAALST LFN+G SCG C+ I C  +    +C SG+ S+ +TATN CPPNYALP+D GGWCNPPR HFD+A P +LKI  Y  GIVPV Y+RVPC K+GG+RFTING  YF LVLV+NV G G I  V++KGSRTGWM+MSRNWG NWQSNA L GQSLSF+V +SD ++ T  ++ PA W FGQTF
Sbjct:   29 FTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGT-SVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTF 254          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXPA1_ARATH4.967e-9971.86Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH1.107e-9872.05Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP14_ARATH7.930e-9770.13Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA8_ARATH1.654e-9469.74Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ARATH3.684e-9470.18Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA5_ORYSJ1.828e-9371.30Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ6.947e-9368.38Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH1.602e-8967.98Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP11_ORYSJ2.732e-8968.89Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ1.832e-8565.20Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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