DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.082e-85
Identity = 148/225 (65.78%), Postives = 170/225 (75.56%), Query Frame = 3
Query:    6 SGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            S   W  A ATFYGGSDASGTM GACGYG+LY  GYG  TAALSTALFN G SCGACF I C   +  WC  G+ SI VTATNFCPPNYAL  D GGWCNPPR HFD++ P +  IA YRAGIVPV+YRRVPC++ GGIRF +NG  YF LVLVTNV G+G + ++ +KGS TGWM+MSRNWG NWQSNA L GQ+LSFRV+A D R  T+ ++ PA W FG T+
Sbjct:   21 SAAKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGT-SITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATY 244          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 4.082e-85
Identity = 145/229 (63.32%), Postives = 176/229 (76.86%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSR--TGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            ++   W    ATFYGGSDASGTM GACGYGNLY+QGYG  TAALSTALF++G SCG C+ + C    +P WC +G+ S+ VTATNFCPPNYALPSD+GGWCNPPRPHFD+A P + +I  YR GIVPV++RRVPCR++GG+RFT+ G  YF LVLVTNVA AG +  + V+GSR   GWM+MSRNWG NWQS A L GQ LSFRV A+D ++     +VP +W+FGQTF
Sbjct:   29 FAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGA-SVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTF 256          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.082e-85
Identity = 147/238 (61.76%), Postives = 174/238 (73.11%), Query Frame = 3
Query:    6 SGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSG------SPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVK---GSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            + G W  AHATFYGG+DASGTM GACGYGN Y QGYG +TAALS  +F +GLSCGACFE++C         G        SI+VTAT+ CP N+ALP D GGWCNPP  HFDL+ P FL+IA +++GIVPVSYRRV CR+KGG+RFTING  YFNLVLV+NV GAGD+  V VK   G +  W +M+RNWGQNWQS A+L GQ+LSF V   DRRS  S+N+ PA W FGQTF G+ F
Sbjct:   26 AAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGRQF 263          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.331e-85
Identity = 145/223 (65.02%), Postives = 175/223 (78.48%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W  AHATFYGGSDASGTM GACGYGNLY+ GY  NTAALSTALFN+G SCG C++I C     P WC  G  SI +TATNFCPPN+A  SDNGGWCNPPRPHFD+A P FL IA+Y+AGIVP+ Y++V CR+ GG+RFTING  YF LVL++NVAG G+I +V +KGS++  W +MSRNWG N+QSN  L GQSLSF+V+ SD     + N+VP+NW+FGQ+F
Sbjct:   28 WLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGK-SITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSF 249          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.551e-84
Identity = 147/226 (65.04%), Postives = 168/226 (74.34%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANE--PAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            WQ AHATFYGG+DASGTM GACGYGNLYSQGYG   AALSTALFN+G SCG C++I C  +  P WC  G  ++ +TATNFCPPN+ LPSDNGGWCNPPRPHFD+A P + KI  Y AGI+PV Y+RVPC KKGG+RFTING  YF LVLVTNVA AG I  + V GS T  WM M+RNWG  W S A L GQ LSFRV  +D ++    N+VP  W+FGQTF  K
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGV-TVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASK 263          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 2.026e-84
Identity = 139/220 (63.18%), Postives = 171/220 (77.73%), Query Frame = 3
Query:   21 QSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            QSA ATFYGG D SGTM GACGYGNLY+ GYG+  AALS+ALFN+G  CGAC+ I C  ++  WC  G  SI +TATN CPPN+ALPS++GGWCNPPR HFD++ P +  IA Y+AGIVPV+Y+RVPC++ GGIRF I+G  YF LV VTNV G+G + ++++KGS TGWM+MSRNWG NWQSNA L GQSLSF V+  D R  T+WN+ P+NW FG T+
Sbjct:   29 QSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATY 248          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.313e-83
Identity = 141/221 (63.80%), Postives = 170/221 (76.92%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W  A ATFYGGSD +GTM GACGYGNLY+ GYG+N AALS+ALFN+G  CGAC+ I C  ++  WC  G+ SI +TATN CPPNYA  SD GGWCNPPR HFD++ P +  IA Y+AGIVPV+++RVPC+K GGIRFTI+G  YF LV V NV G+G + +V++KGS+T WM+MSRNWGQNWQSNA L  QSLSF+VK  D R  T WNI P+NW FG T+
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTY 242          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.715e-83
Identity = 145/226 (64.16%), Postives = 169/226 (74.78%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANE--PAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSR-TGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            WQ AHATFYGG+DASGTM G CGYG+LYSQGYG   AALSTALFN+G SCG C++I C  +  P WC  G  ++ +TATNFCPPN+ LPSDNGGWCNPPRPHFD+A P + KI  Y AGI+PV Y+RVPC KKGG+RFTING  YFNLVLVTNVA  G I  +++ GS  T WM M RNWG NW S + L GQ+LSFRV   D ++    NIVP+ W+FGQTF  K
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGV-TVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFTSK 258          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.990e-83
Identity = 136/232 (58.62%), Postives = 174/232 (75.00%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGS-RTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF-VGKNF 692
            ++ GPW+ AHATFYGG D SGT++GACGY +   +GYGV T A+ST LF  G  CGAC+E+KC + P  C  G+  ++VTATN CPPN    +DNGGWCNPPR HFDL+MP FL+IA+ +AGIVP+SYRRVPC K GGIR+TI G  YFNLV+V+NV GAGD+  ++VKG+ R  W  + RNWGQ WQ++ VL G+SL+FRV   D R +TSW+++P +WQFG T+   KNF
Sbjct:   37 FTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTYQATKNF 268          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 4.990e-83
Identity = 146/226 (64.60%), Postives = 169/226 (74.78%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANE--PAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSR-TGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  AHATFYGG+DASGTM GACGYG+LYSQGYG   AALSTALFN+G SCG C++I C  +  P WC  G  ++ +TATNFCPPN+ LPSDNGGWCNPPRPHFD+A P + KI  YRAGI+PV Y+RVPC KKGG+RFTING  YFNLVLVTNVA  G I  ++V GS  T W+ M RNWG NW S + L GQ LSFRV   D ++    NIVP+ W+FGQTF  K
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGV-TVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASK 276          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXPA8_ORYSJ4.082e-8565.78Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP29_ORYSJ4.082e-8563.32Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ4.082e-8561.76Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH5.331e-8565.02Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP23_ORYSJ1.551e-8465.04Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ2.026e-8463.18Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ1.313e-8363.80Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ1.715e-8364.16Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ4.990e-8358.62Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ4.990e-8364.60Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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