DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 8.512e-83
Identity = 146/226 (64.60%), Postives = 168/226 (74.34%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANE--PAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSR-TGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  AHATFYGG+DASGTM GACGY +LYSQGYG   AALSTALFN+G SCG C++I C  +  P WC  G  ++ VTATNFCPPN+ LPSDNGGWCNPPRPHFD+A P + KI  YRAGI+PV Y+RVPC KKGG+RFTING  YFNLVLVTNVA  G I  +++ GS  T WM M RNWG NW S + L GQ LSFRV   D ++    NIVP+ W+FGQTF  K
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGV-TVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASK 274          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 7.967e-81
Identity = 139/223 (62.33%), Postives = 168/223 (75.34%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRT-GWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W  AHATFYGG+DASGTM GACGYGNLY+QGYG  TAALSTALFN+GL+CG C+++ C    +  WC  G  S+ +TATNFCPPN+ LPSD+GGWCNPPRPHFD+A P + KI  YR GI+PV Y+RVPC KKGG+RFTING  YF LVL+TNV  AG I  ++VKGS++  WM+M+ NWG  W S A L GQ LSFRV  +D ++    N+V   W+FGQTF
Sbjct:   34 WVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGV-SVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTF 255          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.359e-80
Identity = 134/226 (59.29%), Postives = 174/226 (76.99%), Query Frame = 3
Query:    6 SGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            + G W S  ATFYGG DASGTM GACGYGNLY+QGYGV  AALSTALFN G SCG C+ I C  +  P WC +G+ ++ +TATN CPPN+AL +D+GGWCNPPRPHFD++ P +  I  YRAGIVPV Y++V C ++GG+RFT++GF YF LVL+TNVAG+G +  ++VKGS+TGW+ ++RNWG NWQ N+ LVGQ+LSFRV ++  ++    ++VP  W+FG TF
Sbjct:   23 AAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGT-AVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTF 247          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.359e-80
Identity = 137/220 (62.27%), Postives = 168/220 (76.36%), Query Frame = 3
Query:   24 SAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            + HATFYGGSDASGTM GACGYG+LYS GYG  TAALSTALFN+G SCG C+ I C  A +  WC  G+ S+++TATNFCPPN+ALP++NGGWCNPP  HFD+A P + KI  YR GIVPV ++RV C KKGG+RF ING  YF LV + NV GAG I  V++KGS+TGW++MSRNWG NWQSNA L GQ+LSF +  +D  +    N+VP++W FGQ +
Sbjct:   28 NGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGA-SVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIY 246          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.775e-80
Identity = 138/221 (62.44%), Postives = 168/221 (76.02%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W SA ATFYGGSDASGTM G+CGYGN+YS GYG NT ALS+AL+ +G SCGAC+ + C A+   WC +G+ S+ VTATN+CPPNY+   D GGWCNPPR HFD++ P +  IA Y +GIVPV Y R PCR+ GGIRF I G  Y+ LVLVTNVAG+G +    VKGS T W+SMSRNWG+NWQSNA L GQ+LSFRV+A D    T++++ PANWQFG T+
Sbjct:   27 WTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGT-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGSTY 246          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 6.744e-80
Identity = 132/222 (59.46%), Postives = 173/222 (77.93%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W    ATFYGG+DASGTM GACGYGNLY+ GYG NTAALS+ LFN+G SCG C+ I C  A  P WC +G+ ++ +TATN CPPN+ALPS++GGWCNPPRPHFD+A P +L+I  Y+AGI+PV Y++V C ++GGIRFT+ GF +F LVLV+NVAG+G +  V+VKG  TGW++++RNWG NWQ N+ LVGQ+LSF V ++  ++   +N+VP+ W FG TF
Sbjct:   27 WNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGA-AVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTF 247          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.502e-79
Identity = 139/222 (62.61%), Postives = 170/222 (76.58%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCAN--EPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W S  ATFYGGSDASGTM GACGYGNLY  GYG NTAALS+ALFN+G SCG C++I C +  EP WC  G  ++ +T TN CPPNYAL S++GGWCNPPR HFD+A P +L+I  Y+AGIVPV Y+RVPC K+GG+RFT+ GF YF LVL++NVAG+G I  V VKG  T  M +SRNWG NWQS+A LVGQ+L+F V ++  ++    NIVPA W+FGQ+F
Sbjct:   32 WSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGR-TVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSF 252          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 5.709e-79
Identity = 135/222 (60.81%), Postives = 165/222 (74.32%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W  A ATFYGGSD SGTM GACGYGNLY QGYGV+ AALS ALFN+G SCG C+ I C  +  P WC +G+ ++ VTATN CPPN+ALPSD GGWCNPPRPHFD++ P + +I  Y+AGIVPV Y+RV C ++GG+RFT+ G  YF LVL+TNVAG+G +    +KG+ TGW+ MSRNWG NWQS A L GQ+LSF V  +  +     ++ PA WQFGQTF
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGT-AVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTF 248          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.739e-79
Identity = 131/219 (59.82%), Postives = 169/219 (77.17%), Query Frame = 3
Query:   24 SAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            S  ATFYGGSDASGTM GACGYGNLYS GYG NTAALS+ALFN+G +CG C++I C  +   WC +G+ S+ +TATN CPP+Y+ PS++GGWCNPPR HFD+A P + +I  YR GIVPV+++RV C +KGG+RFTING  YF LVL+TNV G G I  V +KG++TGW++MSRNWG NWQ+N  L  Q++SF V ++  ++    ++ P+NWQFGQTF
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGT-SVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTF 243          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.834e-78
Identity = 131/223 (58.74%), Postives = 163/223 (73.09%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A ATFYG      T +GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+EI C  +P WC  GS  + +TATNFCP NY+  +D   WCNPP+ HFDL++ MFLKIA+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V VKG++TGW++M +NWGQNW +  VL GQ LSFRV  SD  +   WN++P NW FGQTF G+
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGS--VKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDGR 270          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXP24_ORYSJ8.512e-8364.60Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ7.967e-8162.33Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ1.359e-8059.29Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.359e-8062.27Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA9_ORYSJ1.775e-8062.44Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ORYSJ6.744e-8059.46Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.502e-7962.61Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ5.709e-7960.81Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ9.739e-7959.82Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH2.834e-7858.74Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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