DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.517e-26
Identity = 75/238 (31.51%), Postives = 115/238 (48.32%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTMEGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFR--YFNLVLVTNVAGAGDILRVNVKGSR--TGWMSMSRNWGQNWQSNAVL---VGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            G  W S  AT+YGG    G+  GACGY +   Q  +    AA   +LF NG  CG+C++IKC    A   SG P + V  T+ CP         GG C     HFD++   F  +A          AG++ + Y+RVPCR    + F ++     Y+  +LV    G GD+  V++  +R   GW +M ++WG  W+ N+     +    S R+ +   +   + N++P+ WQ G T+
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRAC--SGRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 84/249 (33.73%), Postives = 123/249 (49.40%), Query Frame = 3
Query:    3 YSGGP-------WQSAHATFYGGSDASGTMEGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTI----NGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSL----SFRVKASDRRSSTSWNIVPANWQFGQTF 677
            Y+G P       W +A AT+YG  +  G+  GACGY     Q  +    AA S +L+  G  CGAC+E+KC    A   SG P+ +V  T+ CP         GG C     HFD++      +A+         AGI+ V YRRVPC+  G  I F +    N F YF  VL+    G GD+  V++  +  GW  M +NWG  W+ N+   G++L    S R+ +   +   + N++PA+W+ G T+
Sbjct:   52 YTGSPSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAAC--SGQPATVV-ITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNS-NTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.804e-24
Identity = 74/237 (31.22%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTI-----NGFRYFNLVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNWQSNAVLVGQS-LSFRVKASDRRSSTSWNIVPANWQFGQTFV 680
            W +  AT+YG ++ +G+  GACGY G ++   +    AA S +++ +GL CG+C+++KC    A   SG+P + V  T+ CP         GG C     HFDL+   F  +A          AG++ + Y RVPC   GG++ T      +   YF  VLV    G GD+  V +   G+   W  M ++WG  W+ NA    Q+  S R+ +S  ++  + N++P+ W+ G +++
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSAC--SGNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSYI 259          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 73/236 (30.93%), Postives = 120/236 (50.85%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTI-----NGFRYFNLVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNWQSNAVLVGQS-LSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W +  AT+YG ++ +G+  GACGY     Q  +    AA S +++ +GL CG+C+++KC+   A   SG+P + V  T+ CP         GG C     HFDL+   F  +A          AG++ + Y RVPC   GG+  T      +   YF  VLV    G GD+  +++   G+   W  M ++WG  W+ +A    Q+ LS R+ +S  ++  + N++P+ W+ G ++
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSAC--SGNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASY 258          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 71/236 (30.08%), Postives = 112/236 (47.46%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRA-------GIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDILRVNVK-GSRTGWMSMSRNWGQNW-QSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W+ A AT+YG ++  G+  GACGYG+L           ++S  LF +G  CGAC+++KC +    C   + +++V  T+ CP         GG C   R HFDL+   F ++A   A       G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K  +   W+ M   WG  W      LVG         S +++ T+ +++P NW+   T+  +
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDH-GICSRRAVTVIV--TDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATWCLVRGPLVGPFSVRLTTLSAQKALTARDVIPRNWKPTATYTSR 271          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 69/243 (28.40%), Postives = 116/243 (47.74%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTI--NGFRYFNLVLVTNVAGAGDILRVN----------VKGSRTG-WMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQ 662
            GG W +A AT+YG  + +G  +  GACG+ N+    +   T+  +  LF +G  CG+C++I+C   PA C     ++++T  N+ P +                HFDL+   F  +A+         AGI+ + +RRVPC+  G  + F +       +  +LV    G GD+++V+          V G+ TG W  M  +WG  W+  +N  L G   S R+     ++  +  ++PA+WQ
Sbjct:   89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSLY--------------HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWRLDTNHPLQG-PFSLRITNESGKTLIADQVIPADWQ 315          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 70/236 (29.66%), Postives = 109/236 (46.19%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQ-SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A AT+YG +D  G+  GACGYG L           A+S  LF  G  CGAC++++C  + + C   + +++V  T+ CP         GG C   R HFDL+   F ++A           G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K + +  W  M   WG  W  +   LVG         + R++ ++ +++P NW    T+  +
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCL-DASICSRRAVTVIV--TDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFSVRLTTLTTRQTLSAQDVIPKNWTPKATYTSR 268          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 70/247 (28.34%), Postives = 121/247 (48.99%), Query Frame = 3
Query:   12 GPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTINGFR---YFNLVLVTNVAGAGDILRVNVKGSRTG-------WMSMSRNWGQNWQSNAVLVGQS-LSFRVKASDRRSSTSWNIVPANWQ---FGQTFV 680
            GPW  A AT+YG  + +G  +  GACG+ +     +   T+  +  LF +G  CG+C++I+C  + + C   S ++++T  N+ P     P            HFDL+   F ++A+         +GI+ + + RVPC   G  I F +  +    YF  VLV    G GD+++V++  S+T        W  M  +WG  W+ +     Q+  S R++    ++  + N++PANW+   F ++FV
Sbjct:   53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQS-CSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLDTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFV 283          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 64/230 (27.83%), Postives = 109/230 (47.39%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVN-VKGSRTGWMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANW 659
            W+ A AT+YG    +G  +  GACG+ N     +   T+  +  +F +G  CG+C++I+C N PA C     ++++T  N+ P +              + HFDL+   F  +A+         AGI+ + ++RVPC    G++ T +     N     VLV    G GD+++V+ ++ +   W  M  +WG  W+  SN  L     S R+     +   +  ++PANW
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFP-GLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSNHRLTA-PFSLRITNESGKQLVASQVIPANW 254          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 70/236 (29.66%), Postives = 115/236 (48.73%), Query Frame = 3
Query:    6 SGGPWQSAHATFYGGSDASGTMEGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA-------EYRAGIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDI--LRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLS--FRVK---ASDRRSSTSWNIVPANW 659
            S   W  A AT+YG  +  G+  GACGYG L   +       A++  LF NG  CGAC++++C ++ + C   + ++++  T+ CP            C+    HFDL+  +F ++A           G++PV YRR  C+ +G  I F +N     ++  +LV    G GDI  + +   G+R  W+ M   WG NW     ++G  L   F +K    S  ++ ++ ++VP NW
Sbjct:   32 SNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDK-SICSRRAVTVII--TDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGARE-WLEMKHVWGANW----CIIGGPLKGPFSIKLTTLSAGKTLSATDVVPRNW 248          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXPB5_ORYSJ2.517e-2631.51Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB11_ORYSJ1.381e-2433.73Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ1.804e-2431.22Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ1.293e-2230.93Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB17_ORYSJ3.520e-2030.08Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ6.005e-2028.40Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB16_ORYSJ1.024e-1929.66Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB4_ORYSJ1.747e-1928.34Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ORYSJ2.282e-1927.83Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ARATH2.980e-1929.66Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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