DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 66/236 (27.97%), Postives = 105/236 (44.49%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTINGFRYFN--LVLVTNVAGAGDILRVNV----KGSRTGWMSMSRNWGQNWQSNAVLVGQS-LSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W +  AT+YG  + +G+  GACGY     Q  +    AA S  ++++G  CG+C+ + CA   A   SG P + V  T+  P    L     G C     HFD++   F  +A          AG++ + Y RV C   G G+ F ++     N   +LV       D+  V++     G+   W+ M ++WG  W+ N+    Q   S R+  S  +   + N +PA W  G  +
Sbjct:   39 WSNGIATWYGDPNGAGSEGGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEAC--SGIP-VTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWNPGMAY 271          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 69/242 (28.51%), Postives = 112/242 (46.28%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME---GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTIN----GFRYFNLVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQSNAVL-VGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            G  W  A ATFYG +      +   GACGY ++    +   TA  +  +F +GL C AC+EIKC  EP  C SG P +LV  T+    NY          +    HFDL+   F  +A+        +AG + + +RRV C+   G + T +       ++  +LV   AG G+I+ V++K   +  ++ M  +WG  W+ +    +    S R+ +         +++PANW+    +  K
Sbjct:   15 GSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVEC-SGEP-VLVKITD---KNYE---------HIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIWRIDPKKPLKGPFSIRLTSEGGAHLVQDDVIPANWKPDTVYTSK 241          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 68/241 (28.22%), Postives = 114/241 (47.30%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSIL-VTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN--LVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNWQSNA-VLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            G  W  A AT+YG    +G  +  G CGY ++    +    A  +  +F +GL CG+CFEIKC ++PA C SG P ++ +T  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +      N   +LV  V G GDI+ V++  KGS T +  +  +WG  W+ ++   +   ++ ++       +   +++PA W+    +  K
Sbjct:   46 GSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAEC-SGKPVVVYITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDT-YEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAYTAK 269          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 66/235 (28.09%), Postives = 109/235 (46.38%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNWQSNAVL-VGQSLSFRVKASDRRSSTSWNIVPANWQ 662
            G  W  A  T+YG    +G  +  GACGY ++    + G+N+   +  +F +G  CG+CFE+KC ++P  C      I +T  N  P                  HFDL+   F  +A+        +AGI+ + +RRV C+  G  + T +  +  N     VLV  V G GD+++V +  KGS   W  ++ +WG  W+ +    +    S RV     +   + +++P NW+
Sbjct:   38 GKQWLEARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCG-NDPIFKDGKGCGSCFEVKC-SKPEACSDKPVIIHITDMNTEP--------------IAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKVELKEKGSEE-WKPLNESWGAIWRIDTPKPLKGPFSLRVTTESDQKLVANDVIPDNWK 255          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 64/243 (26.34%), Postives = 107/243 (44.03%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVK-GSRTGWMSMSRNWGQNWQSNA--VLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            G  W  A +T+YG    +G  +  GACGY N+    +   T   +T +F +G  CG+CFEIKC  +P  C   + ++ +T  N                 P  P HFDL+   F  +A+         AG + + +RRV C+     + T +  +  N     +LV  V G GD++ V++K   +  W+ +  +WG  W+ +    L G   + R        S   +++P  W+   ++  K
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESCSGEAVTVTITDDNE---------------EPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVWRIDTPDKLTG-PFTVRYTTEGGTKSEFEDVIPEGWKADTSYSAK 263          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 66/243 (27.16%), Postives = 111/243 (45.68%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVK-GSRTGWMSMSRNWGQNWQSNA--VLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            G  W  A +T+YG    +G  +  GACGY ++    +   T   +T +F +G  CG+CFEIKC  +P  C SG P ++            +  DN     P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD++ V++K   +  W+ +  +WG  W+ +    L G   + R        + + +++P  W+   ++  K
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC-TKPEAC-SGEPVVV-----------HITDDNE---EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK 263          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 66/228 (28.95%), Postives = 101/228 (44.30%), Query Frame = 3
Query:   24 SAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKG-GIRFTINGFRY---FNLVLVTNVAGAGDILRVNV-KGSRTGWMSMSRNWGQ-NWQSNAVLVGQSLSFRVKASDRRSSTSW----NIVPANWQFGQTF 677
            ++ AT+YG  D      G CGYG           + +S  L+NNG  CGAC++++C   P   H     + V AT+      +   D   +   P+ +  +A P   +   Y  G+V V Y+R+PCR  G  + + I+   Y   +  +LV  V G  DIL V V +     W  M R +G  +   N      +L F V  S   +  +W    N +PA+W  G T+
Sbjct:   29 NSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPP---HCSEEGVYVVATD------SGEGDGTDFILSPKAYGRMARP-GTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGS---AGINWIQSPNAIPADWTAGATY 243          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 67/235 (28.51%), Postives = 105/235 (44.68%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNWQSNAVL-VGQSLSFRVKASDRRSSTSWNIVPANWQ 662
            G  W  A AT+YG    +G  +  GACGY ++    + G+N+   +  +F +G  CG+CFEIKC ++P  C      I VT  N  P                  HFDL+   F  +A+        +AGI+   +RRV C+     + T +  +  N     +LV  VAG GD++ V +  KGS   W ++  +WG  W+ +    +    S RV         + + +P  W+
Sbjct:   38 GDKWLEAKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCG-NDPIFKDGKGCGSCFEIKC-SKPEACSDKPALIHVTDMNDEP--------------IAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSEE-WKALKESWGAIWRIDTPKPLKGPFSVRVTTEGGEKIIAEDAIPDGWK 255          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 62/243 (25.51%), Postives = 106/243 (43.62%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVK-GSRTGWMSMSRNWGQNWQSNA--VLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            G  W  A +T+YG    +G  +  GACGY ++    +   T   +T +F +G  CG+CFEIKC  +P  C     ++ +T  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  + G GD++ V++K   +  W+ +  +WG  W+ +    L G   + R          + +++P  W+    +  K
Sbjct:   40 GDEWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESCSGEPVTVHITDDNE---------------EPIAPYHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKESWGAVWRVDTPDKLTG-PFTVRYTTEGGTKGEAEDVIPEGWKADTAYEAK 265          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 62/200 (31.00%), Postives = 97/200 (48.50%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVK-GSRTGWMSMSRNWGQNWQ 563
            G  W  A +T+YG    +G  +  GACGY ++    +   T   +T +F +G  CG+CFE+KC ++P  C SG P I V  T+          DN     P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD++ V++K   +  W+ +  +WG  W+
Sbjct:   44 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKC-SKPESC-SGEP-ITVHITD----------DNE---EPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAIWR 227          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXB12_ORYSJ3.084e-1627.97Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
MPAC1_CYNDA4.028e-1628.51Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
EXB11_MAIZE4.028e-1628.22Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXB10_ORYSJ1.999e-1528.09Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]
MPAL1_LOLPR2.611e-1526.34Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
MPAP1_PHLPR3.410e-1527.16Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]
EXLB1_ARATH5.816e-1528.95Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXPB1_ORYSJ1.296e-1428.51Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAH1_HOLLA2.210e-1425.51Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]
MPAP1_PHAAQ6.431e-1431.00Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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