DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.182e-60
Identity = 117/171 (68.42%), Postives = 140/171 (81.87%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 538
            +F+VA + +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFD RGDVKVI+ATN+IE+LDPAL+RPGRIDRKI F  PD+ T+++I  IHTS+M L++DVNLE  V TKD+ SGADI+A+CTEAGLLALRERRM+VT  DF            E   EGLY+
Sbjct:  267 IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.223e-57
Identity = 110/171 (64.33%), Postives = 135/171 (78.95%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLY 535
            +LFRVAD  +PSI+FIDEIDA+G KRY+  SGG RE+QRTMLELLNQLDGFD+R D+KVI+ATN+IE+LDPAL+RPGRIDRKIEF +PD  T+++IF IHTSRMTL + VN+E  + +K++ SGADIKAICTEAG++ALRERR  VT  DF            + V  GLY
Sbjct:  253 ELFRVADMHAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDFISAREKVFFSKQKMVSAGLY 423          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.934e-56
Identity = 114/169 (67.46%), Postives = 130/169 (76.92%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEG 529
            LF  A++ SPSIVFIDEIDA+GTKRYDA SG EREIQRTMLELLNQLDGFD S+ D+KVI+ATNRI  LDPAL+RPGRIDRKI F  PD  T+R+IF IHTS+M L +DVNLEE +  KD+ SGA+IKAI +EAGLLALRERRM+V   DF            EG P G
Sbjct:  276 LFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGGPAG 444          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 95/158 (60.13%), Postives = 122/158 (77.22%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   D+FR+A + SP+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   T++M L+++V+LEEFV   D  SGADI AIC EAG+ A+RE R  V   DF
Sbjct:  239 EGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDF 396          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 92/158 (58.23%), Postives = 124/158 (78.48%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   D+FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  242 EGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 92/158 (58.23%), Postives = 124/158 (78.48%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   D+FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  242 EGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 92/158 (58.23%), Postives = 124/158 (78.48%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   D+FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  242 EGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 92/158 (58.23%), Postives = 124/158 (78.48%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   D+FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  242 EGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            E  R   D+FR+A + SPSI+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +F    SRM L+DDV+LE++V   D+ SGADI +IC EAG+ A+RE R  V   D
Sbjct:  238 EGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKD 394          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.147e-47
Identity = 91/158 (57.59%), Postives = 126/158 (79.75%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   D+FR+A + SP+I+FIDEIDA+ TKR+DA +G +RE+QR ++ELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IFQ+ TS+M L+D+V+LE++V   D+ SGA+I++IC EAG+ A+R+ R  +   DF
Sbjct:  227 EGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDF 384          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
PRS4_YEAST1.182e-6068.4226S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_ENCCU1.223e-5764.3326S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS4_SCHPO3.934e-5667.4626S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS6B_MANSE2.312e-4860.1326S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_RAT5.150e-4858.2326S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA5.150e-4858.2326S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN5.150e-4858.2326S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN5.150e-4858.2326S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_CAEEL8.784e-4859.87Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_DICDI1.147e-4757.5926S protease regulatory subunit 6B homolog OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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