DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.668e-41
Identity = 85/157 (54.14%), Postives = 110/157 (70.06%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            E  R   +LF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGF+   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  211 EGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.668e-41
Identity = 86/159 (54.09%), Postives = 118/159 (74.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGG-EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A + +PSI+F+DEID++G+ R ++ SGG + E+QRTMLELLNQLDGF+S  ++KV++ TNRI+ LDPALLRPGRIDRKIEFP P    R  I +IH+ +M L   +NL++     +  SGA++KA+CTEAG+ ALRERR+ V+  DF
Sbjct:  222 EGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDF 380          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.097e-41
Identity = 86/158 (54.43%), Postives = 112/158 (70.89%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT +M L   V+L       +  SGAD+KAI TEAG+ A+R+RR  VT  DF
Sbjct:  215 EGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDF 371          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.097e-41
Identity = 83/158 (52.53%), Postives = 111/158 (70.25%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A   +PSI+FIDEIDA+G  R D+ + G+RE+QRT+++LL ++DGFD+RGDVK++ ATNRI+ LD ALLRPGR DR IE PLPD + R  I +IHT  M + +DVNL E     +  +GAD++AIC EAG+ A+R  R  V   DF
Sbjct:  230 EGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDF 387          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 79/158 (50.00%), Postives = 110/158 (69.62%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  I +IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  252 EGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.774e-40
Identity = 84/154 (54.55%), Postives = 115/154 (74.68%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 460
            E  R   D+FR+A + SP+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGF+   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP L D + RR IF    S+M+L+ +V+L+  ++  +  SGA I AI  EAGL A+R+ R  +
Sbjct:  243 EGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNI 396          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A D  P IVF+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFDS G VKVI+ATNR ++LDPALLRPGR+DRKIE  LP+ ++R  I +IH++++T   +++ E  V   D FS AD++ +CTEAG+ A+R  R  V   DF
Sbjct:  227 ESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDF 384          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 81/151 (53.64%), Postives = 111/151 (73.51%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            D+F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L  +V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KNVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A      ++F DEIDAVG  R+D   GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRK+EF LPD+  R  I +IH  +M++  D+  +         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  254 EGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDF 411          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 85/158 (53.80%), Postives = 111/158 (70.25%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD  G+VK+I ATNR + LDPALLRPGR DR IE PLP+ K+R  I +IHT RM L   V+L       +  SGAD+KAI  EAG+ A+R+RR  VT  DF
Sbjct:  216 EGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDF 372          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
PSMR_SULIA4.668e-4154.14Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS8_DICDI4.668e-4154.0926S protease regulatory subunit 8 OS=Dictyostelium... [more]
PSMR_PYRKO6.097e-4154.43Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_METMJ6.097e-4152.53Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS7_PONAB1.358e-4050.0026S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS6B_ASPNG1.774e-4054.5526S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS10_CAEEL2.317e-4051.90Probable 26S protease regulatory subunit S10B OS=C... [more]
PSMR_METM73.026e-4053.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS7_CAEEL3.026e-4049.3726S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PSMR_THEON5.162e-4053.80Proteasome-activating nucleotidase OS=Thermococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
back to top