DC900288
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: A1CF_RAT (APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14 Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 ++NRGF+FV Y ++ A +R+++L +L G+ V WA+P+ D +S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+K +DG +EV LAKP Sbjct: 176 TKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: A1CF_MOUSE (APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14 Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 ++NRGF+FV Y ++ A +R+++L +L G+ V WA+P+ D +S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+K +DG +EV LAKP Sbjct: 176 TKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM46_DANRE (Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14 Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 +NRGF+FV Y ++ A +R+K++ F+L G+T V WA+P+ D +V+ LYV+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++ IDG +EV LAKP Sbjct: 166 KNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELD-EETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKP 292
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_CANFA (RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14 Identity = 53/163 (32.52%), Postives = 83/163 (50.92%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP---GLVPTHLPHAGY 486 +NRGF+FV Y ++ A +R+K++ +L G+ V WA+P+ D + VK LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ E++G LEV LAKP DK+ + + G P GY Sbjct: 194 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAAKGGGAAEAAAPQPGY 348
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_MOUSE (RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14 Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 +NRGF+FV Y ++ A +R+K++ +L G+ V WA+P+ D + VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ + E++G LEV LAKP Sbjct: 192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_RAT (RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 +NRGF+FV Y ++ A +R+K++ +L G+ V WA+P+ D + VK LYV+N+ T+ E IK F + G V +V RD+ F+H+ R A+ A+ + E++G LEV LAKP Sbjct: 192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKILYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_PONAB (RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13 Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 +NRGF+FV Y ++ A +R+K++ +L G+ V WA+P+ D + VK LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ + E++G LEV LAKP Sbjct: 192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_HUMAN (RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13 Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 +NRGF+FV Y ++ A +R+K++ +L G+ V WA+P+ D + VK LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ + E++G LEV LAKP Sbjct: 192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318 The following BLAST results are available for this feature:
BLAST of DC900288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900288 ID=DC900288; Name=DC900288; organism=Citrus sinensis; type=EST; length=794bpback to top |