DC900288

Overview
NameDC900288
Unique NameDC900288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5651 contig Csv1_Contig5651:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: A1CF_RAT (APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408
            ++NRGF+FV Y ++  A  +R+++L    +L G+   V WA+P+   D    +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A++A+K      +DG  +EV LAKP
Sbjct:  176 TKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303          
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: A1CF_MOUSE (APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408
            ++NRGF+FV Y ++  A  +R+++L    +L G+   V WA+P+   D    +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A++A+K      +DG  +EV LAKP
Sbjct:  176 TKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303          
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM46_DANRE (Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408
            +NRGF+FV Y ++  A  +R+K++   F+L G+T  V WA+P+   D      +V+ LYV+N+  +T+ E ++  F   + G V +V          D+ FIH+  R  AL A++      IDG  +EV LAKP
Sbjct:  166 KNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELD-EETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKP 292          
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_CANFA (RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 53/163 (32.52%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP---GLVPTHLPHAGY 486
            +NRGF+FV Y ++  A  +R+K++    +L G+   V WA+P+   D     + VK LYV+N+   T+ + IK+ F +   G V +V         RD+ F+H+A R  A+ A+      E++G  LEV LAKP  DK+    +  +    G      P  GY
Sbjct:  194 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAAKGGGAAEAAAPQPGY 348          
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_MOUSE (RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408
            +NRGF+FV Y ++  A  +R+K++    +L G+   V WA+P+   D     + VK LYV+N+   T+ E IK+ F +   G V +V         RD+ F+H+  R  A+ A+ +    E++G  LEV LAKP
Sbjct:  192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318          
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_RAT (RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408
            +NRGF+FV Y ++  A  +R+K++    +L G+   V WA+P+   D     + VK LYV+N+   T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+ +    E++G  LEV LAKP
Sbjct:  192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKILYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318          
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_PONAB (RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408
            +NRGF+FV Y ++  A  +R+K++    +L G+   V WA+P+   D     + VK LYV+N+   T+ + IK+ F +   G V +V         RD+ F+H+  R  A+ A+ +    E++G  LEV LAKP
Sbjct:  192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318          
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM47_HUMAN (RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408
            +NRGF+FV Y ++  A  +R+K++    +L G+   V WA+P+   D     + VK LYV+N+   T+ + IK+ F +   G V +V         RD+ F+H+  R  A+ A+ +    E++G  LEV LAKP
Sbjct:  192 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318          
The following BLAST results are available for this feature:
BLAST of DC900288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
A1CF_RAT1.187e-1435.56APOBEC1 complementation factor OS=Rattus norvegicu... [more]
A1CF_MOUSE1.187e-1435.56APOBEC1 complementation factor OS=Mus musculus GN=... [more]
RBM46_DANRE3.454e-1435.07Probable RNA-binding protein 46 OS=Danio rerio GN=... [more]
RBM47_CANFA5.892e-1432.52RNA-binding protein 47 OS=Canis familiaris GN=RBM4... [more]
RBM47_MOUSE7.695e-1435.07RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE... [more]
RBM47_RAT1.005e-1335.07RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm... [more]
RBM47_PONAB1.714e-1334.33RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE... [more]
RBM47_HUMAN1.714e-1334.33RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE... [more]

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Properties
Property NameValue
Genbank descriptionDC900288 VSS Citrus sinensis cDNA clone VS28634 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900288 ID=DC900288; Name=DC900288; organism=Citrus sinensis; type=EST; length=794bp
CAAAATCCTTCTCGTAATCGTGGTTTTTCCTTTGTTTTGTATTACAATAA
TGCCTGTGCTGATTATTCAAGGCAGAAAATGCTCAATGCAAACTTTAAGT
TGGATGGAAATACTCCAACCGTCTCATGGGCTGATCCTAAGAGTACACCT
GATNACTCTGCTGCTGCTTCTCAGGTGAAGGCACTTTATGTGAAAAATAT
ACCTGACAACACTTCTACTGAGAAAATAAAAGAACTCTTCCAGCGTCATG
GGGAAGTGACGAAAGTGGTCATGCCTCCTGGAAAATCTGGGAAACGTGAT
TTTGGGTTCATCCATTATGCTGAAAGGTCAAGTGCATTAAAGGCTGTCAA
GGATACTGAGAAATATGAAATTGATGGCCAAGTATTGGAGGTTGTTCTTG
CAAAGCCTCAGACGGATAAGAAAACCGAAGGAACTTTTCCCTACAGTCCT
GGGCTGGTTCCAACCCATTTACCACATGCAGGGTATGGTGGCTTTGCTGG
GACTCCTTATGGCTCCGTAGGTGCTGGATTTGGAGTTGCTGCTGGTTTCC
AGCAGCCCATGATATATGGTAGGGGTCCAATGCCATCAGGGATGCATATG
GTGCCAATGGTCTTACCAGATGGTCAAATTGGCTATGTTCTTCAGCAGCC
TGGAGTACAGATGCCGCCTNCTCGACCACGGAGAGTTGATAGGAGCAATG
GTCCTGGTGGACGTGGAGGACNAGGTGNAGTAGCGGCGGTGATGATGGCA
ACCGTGGCAGAAGAATCGACCCTATAGATGGAGAACATGTAGTT
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