DC900286
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.815e-27 Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPGIVSQVPPRP 383 N+Y+KN+DD + DE+L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P ++Q+ P P Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PNQLAQMRPNP 435 HSP 2 Score: 85.1149 bits (209), Expect = 9.341e-16 Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVY+KN ++V DE LK FSQ G S KVMRD G +KGFGFV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.095e-27 Identity = 70/157 (44.59%), Postives = 100/157 (63.69%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ-----HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP-GLMYQPL---GLRTGWRANGFVPP 446 N+Y+KN+DD V DE+LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+ RKPLY+A+AQRKEDR+AHLQ ++Q M+G +P G P Y G S VP +P G +QP G+R G F+ P Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMP-GPPQHMYVGQNG-ASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVP 487 HSP 2 Score: 74.7146 bits (182), Expect = 1.262e-12 Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVYVKN+ ++ ++EL+ F + G I+SA VMRD+ G ++ FGFV F E A+ AV +G L LYV AQ+K +R+ L+ ++ Q Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 4.469e-26 Identity = 79/185 (42.70%), Postives = 108/185 (58.38%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGY-PSLYY--TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTR--------PAFQVSPLPVN--PKH 494 N+++KN+DD + DE+LK F+ GTITSA+VMRD++G +KGFGFVCFSSPEEA+KA+ + ++ KPLYVAIAQRK+ R QA Q+++ Q ++A +P Y P ++Y P G P PG M P+G G NG VPP + P +Q P P N P+H Sbjct: 335 NLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPG---PNPG-MNGPMG--AGIPKNGMVPPPQQFAGRPNGPMYQGMP-PQNQFPRH 512 HSP 2 Score: 80.1073 bits (196), Expect = 3.005e-14 Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 278 N+YVKNID + TDEE + FSQ G I SA + +D +G KGFGFV F A+KAV +G + LYV AQ+K +R L+ QY Q+ Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQY 323
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.624e-26 Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYA-------QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 383 N+YVKN+DD+ D+ L+A F GTITS+KVMRD+ G+++GFGFVC+SSP+EA+KAV+ +G M+ KPLYVA+AQRK+ R+ L+ Q A Q+ AG G + G P Y PG +P P Sbjct: 331 NLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYM---GQPMYGYPPMPGYGQPMPGMP 461 HSP 2 Score: 76.6406 bits (187), Expect = 3.322e-13 Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV 311 NVY+KN+D +VTD E + G S + RDEKG++KGFGFV + + E A KAV+ + ++ K LY AQ K +R+A L+ + + E SA V Sbjct: 228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGV 330
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 118.242 bits (295), Expect = 9.957e-26 Identity = 75/168 (44.64%), Postives = 98/168 (58.33%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP 473 N++VKN+DD V DE+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVAIAQRK+ R QA Q++Y Q A ++A + P ++Y PP V P P M P+G G NG P R P + V P Sbjct: 323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPP 486 HSP 2 Score: 72.4034 bits (176), Expect = 6.266e-12 Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 N+YVKNI+ + TDE+ + F++ G I SA + +D G KGFGFV + E+A KAV + L+ + LYV AQ+K +R L+ QY Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 2.897e-25 Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 290 N+YVKN+DD + D+ L+ FS G ITSAKVM DE+G +KGFGFVCF++ EA+ AV +G ++ KPLYVA+AQRKE+R+AHL QY +HM G+ Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGM 383 HSP 2 Score: 79.7221 bits (195), Expect = 3.925e-14 Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY-MLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVYVKN +D DE+LK F G ITS KVM E G +KGFGFV F + E A AV +G M K LYVA AQ+K +RQ L+ ++ + Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEE 275
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.942e-25 Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY---PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP 473 N+Y+KN+DD + D++L+A F+ GTITSAKVM DE G +KGFGFVC+SSPEEA+KAV + ++ KPLYV +AQRK+ R++ L Q+Q M + ++A +P Y P ++Y PG +PP G M P G PP P Q P Sbjct: 331 NLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRLQQQAAAGGLPGQYMGNPGVFYPGQPGF---MPPGRGGM--PFGANPQMMMR---PPMPPQNQFPP 484
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 4.942e-25 Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVP--PTRPAFQVSPLP 479 N+Y+KN+DD V DE+LK FS+ G +TS KVM + +G+++GFGFV +S+PEEA A+ +G M+ RKPLYVA+AQRKE+RQAHLQ + Q + + + +PS S ++ PPG P P + G G VP P +QV +P Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRS---PGTMSPVPSPM-SGFHHHPPGGPMSGPHHP--------MFIGHNGQGLVPSQPMGYGYQVQFMP 477 HSP 2 Score: 85.5001 bits (210), Expect = 7.152e-16 Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVYVKN+ ++TD+ELK F + G I+SA VM+D+ G ++ FGFV F SPE A+ AV +G L LYV AQ+K DR+ L+ ++ Q Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQ 316
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 6.454e-25 Identity = 69/151 (45.70%), Postives = 91/151 (60.26%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIP-SGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPP 446 N++VKN+DD + DE+LK F+ GTITSAKVMRDE G ++GFGFVCFS+PEEA+KA+ + ++ KPLYVAIAQRKE R+ L Q+Q M ++A +G P + PP +PPR P G NG +PP Sbjct: 323 NLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPG-QFMPPPMYYGGIPPRVPFQ-GPNPQMAGMPKNGAMPP 471 HSP 2 Score: 70.4774 bits (171), Expect = 2.381e-11 Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 260 N+Y+KN+ + ++ L FS G I S KV DE G+++GFGFV F + +A A+ G +++ + +YVA+ K+DRQ+ L+ Sbjct: 127 NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLE 212 HSP 3 Score: 70.0922 bits (170), Expect = 3.110e-11 Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVYVKNID + + EE + F + G ITSA + +D +G +GFGFV F A+KAV+ + + LYV AQ+K +R L+ QY Sbjct: 220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQY 308
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.101e-24 Identity = 74/169 (43.79%), Postives = 96/169 (56.80%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYY----TTPP--------GIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVS 470 N+YVKN+DD + D++L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+A L QY Q ++ + S ++ S PS Y+ PP G V+ P P QP V P RP +S Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVVPRRPPAHIS 462 HSP 2 Score: 72.0182 bits (175), Expect = 8.183e-12 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 N+YVKN+ DV ++ L+ FSQ G + S KVMRD G ++ FGFV F EEA KAV +G + + LY AQ++ +RQ L+ ++ Q Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282 The following BLAST results are available for this feature:
BLAST of DC900286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900286 ID=DC900286; Name=DC900286; organism=Citrus sinensis; type=EST; length=1248bpback to top |