DC900286
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.295e-22 Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVPPRP 383 N+++KN+DD + D++L+ F+ GTITSAKVM E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVAIAQRK+ R QA Q+++ Q A ++A +P + P Y PP V P P Sbjct: 320 NLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNP 456 HSP 2 Score: 69.707 bits (169), Expect = 4.061e-11 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVY+KNI+ + TD+E + ++ G S + R +G NKGFGFV F + E+A K V + +PLYV AQ+K +RQ L+ QY Sbjct: 217 NVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQY 305
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.114e-22 Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP---PRPGLMYQPLG 407 N++VKN+D+ + E+L+ F GTITS+KVM D+ G +KGFGFVCFS+PEEA+KA+ + M++ KPLYVA+AQRK+ R++ L Q+Q M ++A +P + P ++Y PP P P P +M + G Sbjct: 352 NLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPFPGPNPQMMMRGRG 496 HSP 2 Score: 70.8626 bits (172), Expect = 1.823e-11 Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 N+YVKNID T++E + F+ G ITS + +D +G +KGFGFV F E A+KAV + ++ + +YV AQ+K +R L+ QY Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQY 337
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.375e-19 Identity = 78/226 (34.51%), Postives = 105/226 (46.46%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD------------------------------------------EK---GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPGIVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 476 N+YVKN+ DDV DE+L+ FS GTITSAKVMRD EK G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y PG+V +P RPG P + G R G P FQ P+ Sbjct: 337 NLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFQGIPM 562 HSP 2 Score: 83.9593 bits (206), Expect = 2.081e-15 Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVY+KNID +VTDEE + F + G ITSA + RD++G ++GFGFV FS+ + A AV+ + + + LYV AQ+K +R+ L+ QY Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 4.052e-19 Identity = 78/228 (34.21%), Postives = 105/228 (46.05%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD--------------------------------------------EK---GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPGIVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 476 N+YVKN+ DDV DE+L+ FS GTITSAKVMRD EK G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y PG+V +P RPG P + G R G P FQ P+ Sbjct: 337 NLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFQGIPM 564 HSP 2 Score: 83.9593 bits (206), Expect = 2.081e-15 Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVY+KNID +VTDEE + F + G ITSA + RD++G ++GFGFV FS+ + A AV+ + + + LYV AQ+K +R+ L+ QY Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 5.292e-19 Identity = 65/189 (34.39%), Postives = 94/189 (49.74%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-----------------------------------------EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQ-YAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVP 443 N+Y+KN+ DDV D++L+A FS+ G ITSAKVMRD + G +KGFGFVCFS+P++A+KAV + M+ KPLYVA+AQRK+ R++ L+ A++ ++ ++A +G P Y P Q +PG M P G + G VP Sbjct: 345 NLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAQ---AGMPQQYMQAPVYYAGQ---QPGFMPAPGGRGVPFPQGGIVP 527 HSP 2 Score: 82.4185 bits (202), Expect = 6.055e-15 Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVYVKNI+++VTDEE + F++ G +TS+ + RD++G ++GFGFV F++ E A++AV+ +G + LYV AQ+K +R+ L+ Y Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.179e-18 Identity = 74/217 (34.10%), Postives = 102/217 (47.00%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK---------------------------------------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP--PRPGLMYQPL-GLRTGWRANGFVPPTRPAFQVSPLP 479 N+YVKN+ DD+ DE+L+ F+ GTITSAKVMRD G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y PG +P R GL + P G+ G VP RP P P Sbjct: 333 NLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFY--GPGQQGFIPGGQRGGLPFAPQPGMMMG------VPGGRPGQYPGPFP 541 HSP 2 Score: 78.1814 bits (191), Expect = 1.142e-13 Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVY+KN+D ++++EE + F + G ITSA + RD++G ++GFGFV +S+ + A AV+ + + + LYV AQ+K +R+ L+ QY Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQY 318
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.626e-18 Identity = 68/194 (35.05%), Postives = 97/194 (50.00%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMR-----------------------------DEKGIN------------------------KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP-PRPGLMYQPLGL 410 N+Y+KN+ DD+ DE+L+ FS GTITSAKVMR DE G N KGFGFVCFSSP+EASKAV + M+H KPLYVA+AQRK+ R++ L+ +Q + + ++A +P + P+++Y PG + +P R G+ +Q G+ Sbjct: 341 NLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFY--GPGQQNFIPNQRGGMPFQQPGM 532 HSP 2 Score: 77.411 bits (189), Expect = 1.948e-13 Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVYVKNID D T+EE + F + G ITSA + RD E G ++GFGFV F+S + A+ AV + + LYV AQ+K +R+ L+ QY Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQY 326
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.626e-18 Identity = 77/234 (32.91%), Postives = 104/234 (44.44%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD--------------EKGINK---------------------------------------GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPGIVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 476 N+YVKN+ DDV DE+L+ F GTITSAKVMRD EK +NK GFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y PG+V +P RPG P + G R G P FQ P+ Sbjct: 336 NLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQMPPNFQGIPM 569 HSP 2 Score: 85.8853 bits (211), Expect = 5.476e-16 Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 N+Y+KNID DVT+EE + F Q G ITSA + RD +G ++GFGFV +S+ E A AV+ H + + LYV AQ+K +R+ L+ QY Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQY 321
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 4.480e-18 Identity = 74/230 (32.17%), Postives = 104/230 (45.22%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD------------------------------------------------EK---GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY-----------------TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 476 N+YVKN+ DDV D++L+ F GTITSAKVMRD EK G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++ L+ +Q ++ + ++A + Y P+++Y PG++ +P RPG P + G R G P FQ P+ Sbjct: 327 NLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPFPGQQGGRGVGPNQQIPPNFQGLPM 556 HSP 2 Score: 80.8777 bits (198), Expect = 1.762e-14 Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 N+Y+KNID +V DEE + F + G ITSA + RD +G ++GFGFV FS+ E A AV + + + LYV AQ+K +R+ L+ QY Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 2.458e-16 Identity = 65/194 (33.51%), Postives = 87/194 (44.85%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKV-MRDEK----------------------------------------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR------------QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGL 389 N+Y+KN++DDV DE+L+ F+ GTITSAKV +RDE+ G +KGFGFVCFS+P+EA+KAV + M+ KPLYVA+AQRK+ R Q +Q Q Q GI + P P +Y PPG Q+P G+ Sbjct: 333 NLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQLRMQQQQQQQFGGI--PQMFIAPGQQPMMY---PPGARGQMPFPAGM 521 HSP 2 Score: 78.9518 bits (193), Expect = 6.694e-14 Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 N+YVKNID DVTDE+ + F + G ITSA + RD++G ++GFGFV + E A+ AV+ + + LYV AQ+K +R+ L+ QY Sbjct: 230 NIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQY 318 The following BLAST results are available for this feature:
BLAST of DC900286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900286 ID=DC900286; Name=DC900286; organism=Citrus sinensis; type=EST; length=1248bpback to top |