DC900280

Overview
NameDC900280
Unique NameDC900280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.442e-36
Identity = 86/200 (43.00%), Postives = 114/200 (57.00%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRSARTSN 646
            A DP PLQD CVAD+ +P+ +NGFPCK    V                 + K    VT  +V  FP +NT G+SL RID    G+NPPH HPRATE   VL+G + VGFVT+N N  FSKV+  G VF+ P+A +HFQ+N+   K A      +SQNPGV      +F + P + + VL K+F V   VI+ ++S  + N
Sbjct:   23 AFDPSPLQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQVEKKVIDWLKSQFSEN 222          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.189e-36
Identity = 87/199 (43.72%), Postives = 114/199 (57.29%), Query Frame = 2
Query:   62 SDPDPLQDICVADLD--------APISINGFPCKPASEVXXXXXXXXXXXXXXXXXV-FKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            +DP+P+QD CVA +         A  +  GFPCKPAS V                   F   VT  +   FP +NT GVS+ R+DL  GG+NP H+HPRATE   V+ GRVL GFV+T   F+SKVL  G  F++PR  +HFQ NVG   A  +  FNSQ PGV  +  TLF ++P +P++VL KSF V   +I  ++S
Sbjct:   25 ADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKS 223          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.526e-35
Identity = 84/195 (43.08%), Postives = 113/195 (57.95%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A DP PLQD CVAD+++P+ +NGF CK   +V                   K    VT  +V  FP +NT G+SL RID    G+NPPH HPRATE   VL+G + VGFVT+N N  FSKV+  G VF+ P+A +HFQ+N+   K A      +SQNPGV      +F + P + + VLTK+F V   +I+ ++S
Sbjct:   23 AYDPSPLQDFCVADMNSPVRVNGFACKNPMDVSSEDFFNAAKFDMPRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQVEKKLIDWLQS 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.026e-34
Identity = 82/194 (42.27%), Postives = 110/194 (56.70%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA-VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP  LQD CV D  + + +NGFPCK A +V                   + + VT  +V   P +NT GVSL RID    G+NPPHTHPRATE   VL+G + VGFV +N  N  F+KVL  G VF+ P+  VHFQ N G   A  +   +SQNPGV      +F + PS+ + +L K+F V  ++I+ I++
Sbjct:   28 ASDPGLLQDFCVVDKMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQA 221          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.091e-34
Identity = 80/194 (41.24%), Postives = 110/194 (56.70%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFK-RAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP  LQD+CVAD  + + +NG  CK   +V                   +  AVT  +V   P +NT G+SL RID  + G+NPPHTHPRATE   VL+G + VGFVT+N  N  F+KV+  G VF+ P+  VHFQ N G   A  +   +SQNPGV      +F + PS+ + +L K+F V   V++ I++
Sbjct:   28 ASDPSHLQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQVEKTVVDQIQA 221          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.649e-34
Identity = 81/197 (41.12%), Postives = 104/197 (52.79%), Query Frame = 2
Query:   53 SHASDPDPLQDICVAD---LDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            S A DPD LQD+CVAD   L  P+ +NG PCK    V                       VT   V   P +NT GVS+ RID    G++PPHTHPRATE   V +G + VGFVTT N  F++ ++ G VF+ PR  VHFQ N G   A  +  FNSQ PG      TLF   P +P+  L ++F V   ++ +I+S
Sbjct:   20 SLAGDPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIKS 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.684e-34
Identity = 80/196 (40.82%), Postives = 108/196 (55.10%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVADL++P+ +NGF CK                        K    VT  +V   P +NT G+S+ R+D    G+NPPHTHPRATE   VL+G + VGFVT+N  N   SKVL  G VF+ P   +HFQ N    K A  +   +SQNPGV      +F +NP + + +L K+F V   +I+ +++
Sbjct:   24 ASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQA 219          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.684e-34
Identity = 76/197 (38.58%), Postives = 111/197 (56.35%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA---VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A++P PLQD CVADL++ + +NGF CK  + V                    +    +T  +V   P +NT G+S+ R+D    G+NPPHTHPRATE   VL+G + VGFVT+N  N  FSKVL  G VF+ P+  +HFQ N+   K A      +SQNPG+      +F +NP + + +L K+F V   +I+ +++
Sbjct:   23 AAEPSPLQDFCVADLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLLQA 219          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.134e-33
Identity = 81/197 (41.12%), Postives = 102/197 (51.78%), Query Frame = 2
Query:   53 SHASDPDPLQDICVAD---LDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            S A DPD LQD+CVAD   L  P+ +NGFPCK    V                       VT   V   P +NT GVS+ RID    G+NPPHTHPRATE   V++G + VGFVTT N  F++ +  G VF+ PR  VHFQ N G   A  +   NSQ PG       LF   P +P+  L ++F V   ++  I+S
Sbjct:   20 SLAGDPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKS 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.527e-33
Identity = 80/167 (47.90%), Postives = 95/167 (56.89%), Query Frame = 2
Query:   53 SHASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLF 550
            S ++DPD LQD+CVADL + I INGFPCK A+ V                   F   VT  +V   P +NT GVSL RID   GG+NPPHTHPRATE   VL+G + VGF+TT N   S+ L  G VF  P+  VHFQ N G   A+ +  FNSQ PG      TLF
Sbjct:   20 SSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLF 186          
The following BLAST results are available for this feature:
BLAST of DC900280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL83_ORYSJ2.442e-3643.00Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ3.189e-3643.72Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ3.526e-3543.08Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL22_ORYSJ1.026e-3442.27Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL23_ORYSJ5.091e-3441.24Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL32_ORYSJ6.649e-3441.12Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL82_ORYSJ8.684e-3440.82Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL81_ORYSJ8.684e-3438.58Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL13_ORYSJ1.134e-3341.12Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL21_ARATH2.527e-3347.90Germin-like protein subfamily 2 member 1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionDC900280 VSS Citrus sinensis cDNA clone VS28627 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900280 ID=DC900280; Name=DC900280; organism=Citrus sinensis; type=EST; length=791bp
ATCAATGTCACTCTTCGGGCTGCTACTAGTGTTAGTGATTCTACCCTTCC
CTTCCCACGCAAGTGACCCTGATCCCTTACAAGACATCTGTGTTGCGGAT
TTGGATGCCCCCATCTCGATCAATGGTTTCCCGTGCAAGCCTGCTTCGGA
AGTGACTTCTGATGATTTCTTCACGGATTTTTCCAAGGATCCGACGACAT
TCGATGTCTTTAAGCGTGCAGTTACATTTGGTGATGTGTTTGGCTTTCCA
GCGGTCAACACTCAAGGAGTTTCACTCTTCCGAATTGACCTGGGTGTCGG
CGGAATAAATCCGCCTCACACGCATCCTCGCGCAACTGAGGCTGGTATTG
TTCTTAAAGGGAGGGTGCTTGTGGGATTTGTAACAACTAATAATACCTTT
TTCTCAAAGGTTTTGACTCCCGGGATGGTGTTCTTAATTCCTAGAGCACA
TGTCCATTTCCAATTAAACGTTGGAAAAGGAAAGGCTACTTTCGTGCCCA
TTTTCAACAGTCAAAATCCCGGCGTTTCGGATTCAGTCGGTACTCTGTTT
GATACTAATCCCTCAGTTCCCAATAGTGTGTTGACCAAATCTTTCCTAGT
AAGTGATGATGTGATCAATGCCATCAGATCGGCTCGAACGTCAAATAAGT
CTGGCCATCAATTCAACACCCGGTCTAGCTATTAGCATTCTCCATGCTTG
ATCGATATCTTTTATTGTCTCAAAATTGTTAGATTTATTTTATCTAGCAA
TTGTTAAATAAAATTACAGCTGAGGCAATATATAACTATCG
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