DC900280

Overview
NameDC900280
Unique NameDC900280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.527e-33
Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA---VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-----NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD+CVAD ++P+ +NGFPCK A +V                    +A   VT  +V     +NT G+S+ RID    G NPPHTHPRATE   V++G + VGFVT+N     N  F+K L  G VF+ P   +HFQ N    K A  +   +SQNPG       +F +NP + + VL K+F V    ++ +++
Sbjct:   22 ASDPSPLQDLCVADKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33
Identity = 82/198 (41.41%), Postives = 110/198 (55.56%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKR--AVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-----NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP  LQD CVAD  + + +NGF CK   +V                 V  +  AVT   V   P +NT G+S  RID    G NPPHTHPRATE   VL+G +LVGFVT+N     N  F+K+L PG VF+ P+  +HFQLN G   A  +   +SQNPGV      +F + P + + VL K+F++  D ++ I++
Sbjct:   27 ASDPSQLQDFCVADKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWIQA 224          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.602e-33
Identity = 79/200 (39.50%), Postives = 108/200 (54.00%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA---VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-----NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD ++P+ +NGFPCK A +V                    +A   VT  +V     +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+N     N  F+K L  G VF+ P+  +HFQ N    K A  +   +SQNPG       +F +N  + + VL K+F V    ++ +++
Sbjct:   22 ASDPSPLQDFCVADRNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.638e-32
Identity = 78/200 (39.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA---VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-----NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A DP PLQD CVAD ++P+ +NGFPCK A +V                    +A   VT  +V     +NT G+S+ RID    G NPPHTHPRATE   V +G + VGFVT+N     N  F+K L  G VF+ P+  +HFQ N    K A  +   +SQNPG       +F +NP + + VL K+F V    ++ +++
Sbjct:   22 AFDPSPLQDFCVADRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.139e-32
Identity = 77/191 (40.31%), Postives = 107/191 (56.02%), Query Frame = 2
Query:   62 SDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX--VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIR 628
            +D + LQD CVADL   + +NG+PCK  ++V                       AVT  +V   P +NT GVS+ RID   GG+NPPH HPRA+EA  VL+GR+ VGF+TT     SK +  G VF+ P+A +HFQ N  K  A+ +  F+SQ PG      +LF +NP +P+ +L K+F  +   I  I+
Sbjct:   22 ADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAFGAAAPEIQKIK 212          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 80/195 (41.03%), Postives = 106/195 (54.36%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD+ +P+ +NGF C    EV                       VT  +V   P +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+  NNT FSKVL  G VF+ P+  +HFQ N    + A  +   +SQNPG       +F + P + + VL K+F V    I+ +++
Sbjct:   22 ASDPSPLQDFCVADMHSPVRVNGFACLNPMEVNADHFFKAAKLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQA 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.062e-31
Identity = 80/195 (41.03%), Postives = 105/195 (53.85%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD+ +P+ +NGF C    +V                       VT  +V   P +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+N  N FFSKVL  G VF+ P   +HFQ N    K A  +   +SQNPG       +F + P + + VL K+F V    I+ +++
Sbjct:   22 ASDPSPLQDFCVADMHSPVLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQA 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.062e-31
Identity = 85/205 (41.46%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   65 DPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA---VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT---NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRSARTSNKSGH 658
            DP PLQD CVA  DA  + +NG  CK    V                    R    VT  +V   P +NT GVSL RID   GG NPPHTHPRATE  +V++G +LVGFVT+   NN  FSKVL PG VF+ P   +HFQ+NVG+  A       SQNPG       +F + PS+   +L K+F +  +V+  + +  +SN   H
Sbjct:   26 DPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGN--TINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVKYLEARFSSNYDRH 228          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.089e-31
Identity = 79/195 (40.51%), Postives = 103/195 (52.82%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPC-KPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD  +P+ +NGF C  P                          VT  +V   P +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+  NNT FSKVL  G VF+ P   +HFQ N    + A  +   +SQNPG       +F + P + + VL K+F V    I+ +++
Sbjct:   22 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQA 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.089e-31
Identity = 77/200 (38.50%), Postives = 106/200 (53.00%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA---VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-----NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD  +P+ +NG PCK A +V                    +A   VT  +V     +NT  +S+ RID    G NPPHTHPRATE   VL+G + VGFVT+N     N  F+K L  G VF+ P+  +HFQ N    K A  +   +SQNPG       +F ++P + + VL K+F V    ++ +++
Sbjct:   22 ASDPSPLQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSHPPISDDVLAKAFQVDKKAMDWLQA 221          
The following BLAST results are available for this feature:
BLAST of DC900280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL123_ORYSJ2.527e-3339.50Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL41_ORYSJ3.300e-3341.41Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL122_ORYSJ9.602e-3339.50Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL121_ORYSJ1.638e-3239.00Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL23_ARATH2.139e-3240.31Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL85_ORYSJ3.649e-3241.03Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL811_ORYSJ1.062e-3141.03Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL17_ARATH1.062e-3141.46Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL88_ORYSJ3.089e-3140.51Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL124_ORYSJ3.089e-3138.50Putative germin-like protein 12-4 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionDC900280 VSS Citrus sinensis cDNA clone VS28627 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900280 ID=DC900280; Name=DC900280; organism=Citrus sinensis; type=EST; length=791bp
ATCAATGTCACTCTTCGGGCTGCTACTAGTGTTAGTGATTCTACCCTTCC
CTTCCCACGCAAGTGACCCTGATCCCTTACAAGACATCTGTGTTGCGGAT
TTGGATGCCCCCATCTCGATCAATGGTTTCCCGTGCAAGCCTGCTTCGGA
AGTGACTTCTGATGATTTCTTCACGGATTTTTCCAAGGATCCGACGACAT
TCGATGTCTTTAAGCGTGCAGTTACATTTGGTGATGTGTTTGGCTTTCCA
GCGGTCAACACTCAAGGAGTTTCACTCTTCCGAATTGACCTGGGTGTCGG
CGGAATAAATCCGCCTCACACGCATCCTCGCGCAACTGAGGCTGGTATTG
TTCTTAAAGGGAGGGTGCTTGTGGGATTTGTAACAACTAATAATACCTTT
TTCTCAAAGGTTTTGACTCCCGGGATGGTGTTCTTAATTCCTAGAGCACA
TGTCCATTTCCAATTAAACGTTGGAAAAGGAAAGGCTACTTTCGTGCCCA
TTTTCAACAGTCAAAATCCCGGCGTTTCGGATTCAGTCGGTACTCTGTTT
GATACTAATCCCTCAGTTCCCAATAGTGTGTTGACCAAATCTTTCCTAGT
AAGTGATGATGTGATCAATGCCATCAGATCGGCTCGAACGTCAAATAAGT
CTGGCCATCAATTCAACACCCGGTCTAGCTATTAGCATTCTCCATGCTTG
ATCGATATCTTTTATTGTCTCAAAATTGTTAGATTTATTTTATCTAGCAA
TTGTTAAATAAAATTACAGCTGAGGCAATATATAACTATCG
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