DC900280

Overview
NameDC900280
Unique NameDC900280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.034e-31
Identity = 80/195 (41.03%), Postives = 104/195 (53.33%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPC-KPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD  +P+ +NGF C  P                          VT  +V   P +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+  NNT FSKVL  G VF+ P   +HFQ N    + A  +   +SQNPGV      +F + P + + VL K+F V    I+ +++
Sbjct:   22 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVGKGTIDWLQA 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.034e-31
Identity = 79/195 (40.51%), Postives = 104/195 (53.33%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD+ +P+ +NGF C     V                       VT  +V   P +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+  NNT FSKVL  G VF+ P   +HFQ N    + A  +   +SQNPG       +F + P + + VL K+F V    I+ +++
Sbjct:   22 ASDPSPLQDFCVADMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQA 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 72/193 (37.31%), Postives = 105/193 (54.40%), Query Frame = 2
Query:   71 DPLQDICVADLDAPISINGFPCKP--ASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRSARTS 643
            +P QD CVADL A  + +G+PCK    SE                  +   A    ++  FP +NT G+S++ + +  GG N PH+HP  TEAG+V++G VLVGF+TTN T +SKV+ PG +F+IP   +H++ NVGK +   + +     P       TL  T P++PN VL  +F      IN +RS  T+
Sbjct:   38 NPFQDFCVADLQATPTNSGYPCKSQVTSEDFFYSGLNTPLNTSNPKGI---AANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSKFTA 227          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.987e-31
Identity = 75/194 (38.66%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP  LQD CVAD  + + +NGF CK PA+                       AVT  +V     +NT G+SL R+D    G+NPPH HPRATE   +L+G + VGFVT+N  N  F+KVL  G VF+ P+  +HFQ N G      +   +SQNPGV      +F + P + + +L K+F V   +++ I++
Sbjct:   21 ASDPSQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQA 214          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 78/195 (40.00%), Postives = 103/195 (52.82%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD  +P+ +NGF C     V                       VT  +V   P +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+  NNT FSKVL  G VF+ P   +HFQ N    + A  +   +SQNPG       +F + P + + +L K+F V    I+ +++
Sbjct:   23 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQA 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 79/195 (40.51%), Postives = 103/195 (52.82%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGK-ATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CVAD  +P+ +NGF C     V                       VT  +V   P +NT G+S+ RID    G NPPHTHPRATE   VL+G + VGFVT+  NNT FSKVL  G VF+ P   +HFQ N    + A  +   +SQNPG       +F + P + + VL K+F V    I+ +++
Sbjct:   23 ASDPSPLQDFCVADEHSPVLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQA 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 79/182 (43.41%), Postives = 100/182 (54.95%), Query Frame = 2
Query:   65 DPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA-VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT---NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSF 595
            DP+PLQD CVA  +   + +NG  CK    V                  F  + VT  DV   P +NT GVSL R+D   GG NPPH HPRATE  +V KG++LVGFV++   NN  F KVL  G VF+ P   +HFQ+NV + +A     F SQNPG       +F +NPS+P  VL K+F
Sbjct:   27 DPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAF 208          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.298e-29
Identity = 78/191 (40.84%), Postives = 102/191 (53.40%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAP--ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVI 616
            ASDP  LQD CV+   +   + +NG  CK P                          VT  +V     +NT G+SL RID  V G NPPHTHPRATE  +V +G +LVGFVT+N  N  FSKVL  G VF+ P   +HFQ N+GK  A      +SQNPGV     T+F  NP++  ++L K+F ++  V+
Sbjct:   24 ASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAFQLNPRVV 214          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.891e-29
Identity = 79/204 (38.73%), Postives = 108/204 (52.94%), Query Frame = 2
Query:   59 ASDPDPLQDICVAD---LDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXV---FKRAVTFGDVFGFPAVNTQGVSLFRIDLGV-GGINPPHTHPRATEAGIVLKGRVLVGFVTT-----NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLF-DTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A DPD LQDICVAD   L  P+ +NGFPCKP + V                        AVT   V   P +NT GVS+ R+D    GG NPPH+HPRATE   V  G + VGFV       ++   ++V+  G VF+ PR  +H++ +VG+  A  +  F+SQ PG   +   LF  ++P+VP  VL ++F V   V+  I+S
Sbjct:   27 AGDPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSSSPAVPTDVLARAFQVDGGVVENIKS 230          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.776e-29
Identity = 76/199 (38.19%), Postives = 107/199 (53.77%), Query Frame = 2
Query:   53 SHASDPDPLQDICVA--DLDAPISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT---NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            + A+DP PLQD CVA  DL   + +NG  CK P                       K  VT  +V   P +NT G+SL RID    G NPPHTHPRATE  ++++G + VGFV++   NN  F+KVL PG VF+ P   +HFQ+N+GK  A      +SQN GV     T+F + P +   +L ++F +  +V+  + +
Sbjct:   20 AEANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEA 218          
The following BLAST results are available for this feature:
BLAST of DC900280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL89_ORYSJ4.034e-3141.03Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ4.034e-3140.51Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GLT3_ARATH5.269e-3137.31Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL21_ORYSJ8.987e-3138.66Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL87_ORYSJ1.533e-3040.00Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL86_ORYSJ1.533e-3040.51Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL16_ARATH1.533e-3043.41Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL111_ARATH1.298e-2940.84Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL14_ORYSJ2.891e-2938.73Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GL114_ARATH3.776e-2938.19Germin-like protein subfamily 1 member 14 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionDC900280 VSS Citrus sinensis cDNA clone VS28627 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900280 ID=DC900280; Name=DC900280; organism=Citrus sinensis; type=EST; length=791bp
ATCAATGTCACTCTTCGGGCTGCTACTAGTGTTAGTGATTCTACCCTTCC
CTTCCCACGCAAGTGACCCTGATCCCTTACAAGACATCTGTGTTGCGGAT
TTGGATGCCCCCATCTCGATCAATGGTTTCCCGTGCAAGCCTGCTTCGGA
AGTGACTTCTGATGATTTCTTCACGGATTTTTCCAAGGATCCGACGACAT
TCGATGTCTTTAAGCGTGCAGTTACATTTGGTGATGTGTTTGGCTTTCCA
GCGGTCAACACTCAAGGAGTTTCACTCTTCCGAATTGACCTGGGTGTCGG
CGGAATAAATCCGCCTCACACGCATCCTCGCGCAACTGAGGCTGGTATTG
TTCTTAAAGGGAGGGTGCTTGTGGGATTTGTAACAACTAATAATACCTTT
TTCTCAAAGGTTTTGACTCCCGGGATGGTGTTCTTAATTCCTAGAGCACA
TGTCCATTTCCAATTAAACGTTGGAAAAGGAAAGGCTACTTTCGTGCCCA
TTTTCAACAGTCAAAATCCCGGCGTTTCGGATTCAGTCGGTACTCTGTTT
GATACTAATCCCTCAGTTCCCAATAGTGTGTTGACCAAATCTTTCCTAGT
AAGTGATGATGTGATCAATGCCATCAGATCGGCTCGAACGTCAAATAAGT
CTGGCCATCAATTCAACACCCGGTCTAGCTATTAGCATTCTCCATGCTTG
ATCGATATCTTTTATTGTCTCAAAATTGTTAGATTTATTTTATCTAGCAA
TTGTTAAATAAAATTACAGCTGAGGCAATATATAACTATCG
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