DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.438e-53
Identity = 102/157 (64.97%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K T   TVTGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQFY RTTDVTG V          ++MVMPGD + + V LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 VEIVGMKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTGIVELAAG-----TEMVMPGDNVAVTVNLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CHLCH (Elongation factor Tu OS=Chlorobium chlorochromatii (strain CaD3) GN=tuf PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.438e-53
Identity = 102/157 (64.97%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGL+ TR   VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPGTI PHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VEL+ P+A ++G+RFAIREGG+TVGAG +  I E
Sbjct:  242 VEIVGLRPTRKSVVTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGTIKPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLAIEVELLAPIAMDEGLRFAIREGGRTVGAGSVTKINE 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CHACO (Elongation factor Tu, chloroplastic OS=Chara connivens GN=tufA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.438e-53
Identity = 95/153 (62.09%), Postives = 129/153 (84.31%), Query Frame = 3
Query:    6 VDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVI 461
            V+L+GL E  R+  VTG+EMF++ L++  AG+N+G+LLRG++K DI+RGMV+A+PGTI PHT+F A VY+L+KEEGGRHSPFFAGYRPQF++RT DVTG + +   D  ++++MVMPGDR+KM+V LI P+A E+ MRFAIREGG+T+GAGV+
Sbjct:  253 VELIGLNEKIRSTVVTGLEMFRRLLEQGFAGENIGVLLRGIEKKDIERGMVIAQPGTIEPHTRFEAQVYILRKEEGGRHSPFFAGYRPQFFVRTADVTGVIEAFEYDNGDKTRMVMPGDRVKMIVNLICPIAIEKKMRFAIREGGRTIGAGVV 405          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ALKMQ (Elongation factor Tu 2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 3.438e-53
Identity = 105/158 (66.46%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    6 VDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            + LVGL E  R   VTGVEMF+K LD+  AGDNVG+LLRG+Q+ +I+RG VLAK G+I PHTKF+A VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD I M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 ISLVGLSEAPRKLVVTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVLAKTGSIQPHTKFMAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_THETN (Elongation factor Tu-A OS=Thermoanaerobacter tengcongensis GN=tufA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.438e-53
Identity = 103/158 (65.19%), Postives = 127/158 (80.38%), Query Frame = 3
Query:    6 VDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL  E+R   VTGVEMF+KTLDEA AGDN+G+LLRG+Q+ +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + + VELI P+A E+G++FAIREGG+TVGAGV+ +IIE
Sbjct:  248 VEIIGLTTESRKTVVTGVEMFRKTLDEAQAGDNIGVLLRGIQRDEVERGQVLAKPGTIKPHTKFEAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----QLPEGVEMVMPGDHVTLRVELITPIAMEEGLKFAIREGGRTVGAGVVSAIIE 400          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ALKMQ (Elongation factor Tu 1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.438e-53
Identity = 105/158 (66.46%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    6 VDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            + LVGL E  R   VTGVEMF+K LD+  AGDNVG+LLRG+Q+ +I+RG VLAK G+I PHTKF+A VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD I M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 ISLVGLSEAPRKLVVTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVLAKTGSIQPHTKFMAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_MANSM (Elongation factor Tu OS=Mannheimia succiniciproducens (strain MBEL55E) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.491e-53
Identity = 102/157 (64.97%), Postives = 124/157 (78.98%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+KET   TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  243 VEIVGIKETAKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_HAES2 (Elongation factor Tu OS=Haemophilus somnus (strain 2336) GN=tuf PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.491e-53
Identity = 102/157 (64.97%), Postives = 124/157 (78.98%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+KET   TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  243 VEIVGIKETTKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_HAES1 (Elongation factor Tu OS=Haemophilus somnus (strain 129Pt) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.491e-53
Identity = 102/157 (64.97%), Postives = 124/157 (78.98%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+KET   TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  243 VEIVGIKETTKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DICNV (Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A) GN=tuf PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.491e-53
Identity = 100/157 (63.69%), Postives = 125/157 (79.62%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPGTITPHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG          E  +MVMPGD +KM+V+LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 LEIVGLRDTAKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLAKPGTITPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGECV-----LPEGVEMVMPGDNVKMIVQLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIE 396          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GEOUR3.438e-5364.97Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_CHLCH3.438e-5364.97Elongation factor Tu OS=Chlorobium chlorochromatii... [more]
EFTU_CHACO3.438e-5362.09Elongation factor Tu, chloroplastic OS=Chara conni... [more]
EFTU2_ALKMQ3.438e-5366.46Elongation factor Tu 2 OS=Alkaliphilus metalliredi... [more]
EFTU1_THETN3.438e-5365.19Elongation factor Tu-A OS=Thermoanaerobacter tengc... [more]
EFTU1_ALKMQ3.438e-5366.46Elongation factor Tu 1 OS=Alkaliphilus metalliredi... [more]
EFTU_MANSM4.491e-5364.97Elongation factor Tu OS=Mannheimia succiniciproduc... [more]
EFTU_HAES24.491e-5364.97Elongation factor Tu OS=Haemophilus somnus (strain... [more]
EFTU_HAES14.491e-5364.97Elongation factor Tu OS=Haemophilus somnus (strain... [more]
EFTU_DICNV4.491e-5363.69Elongation factor Tu OS=Dichelobacter nodosus (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
back to top