DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_AERHH (Elongation factor Tu OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.491e-53
Identity = 101/156 (64.74%), Postives = 123/156 (78.85%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+N+G LLRGV++ D++RG VLAKPGTI PHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENIGALLRGVKREDVERGQVLAKPGTIKPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIAPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSCS (Elongation factor Tu 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.491e-53
Identity = 102/160 (63.75%), Postives = 129/160 (80.62%), Query Frame = 3
Query:    3 TVDLVGLKET--RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            TV++VG+     +   VTGVEMFQKTLDE +AGDNVG+LLRG+++ +++RG VLA PG+I PH KF A VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG +S          +MVMPGD I+M+VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  247 TVEIVGMSHEAPKKTVVTGVEMFQKTLDEGIAGDNVGVLLRGIERTEVERGQVLAAPGSIKPHAKFKANVYVLKKEEGGRHTPFFPGYRPQFYIRTTDVTGAIS-----LPAGVEMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ROSCS (Elongation factor Tu 1 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.491e-53
Identity = 102/160 (63.75%), Postives = 129/160 (80.62%), Query Frame = 3
Query:    3 TVDLVGLKET--RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            TV++VG+     +   VTGVEMFQKTLDE +AGDNVG+LLRG+++ +++RG VLA PG+I PH KF A VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG +S          +MVMPGD I+M+VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  247 TVEIVGMSHEAPKKTVVTGVEMFQKTLDEGIAGDNVGVLLRGIERTEVERGQVLAAPGSIKPHAKFKANVYVLKKEEGGRHTPFFPGYRPQFYIRTTDVTGAIS-----LPAGVEMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_NITOC (Elongation factor Tu OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.865e-53
Identity = 98/157 (62.42%), Postives = 124/157 (78.98%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ET+    TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKP +ITPHTKF A VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     D  +  +MVMPGD I+M V LI P+A E+G+RFA+REGG+TVGAGV+  +IE
Sbjct:  245 IEIVGMRETQKTICTGVEMFRKLLDEGRAGDNVGVLLRGTKREDVERGQVLAKPKSITPHTKFYAEVYVLSKDEGGRHTPFFTGYRPQFYFRTTDVTGAI-----DLPDGVEMVMPGDNIQMTVSLIAPIAMEEGLRFAVREGGRTVGAGVVSKVIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CHRSD (Elongation factor Tu OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=tuf PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.865e-53
Identity = 101/157 (64.33%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGLK+T   TVTGVEMF+K LDE  AG+N+G LLRG ++ D++RG VLAKPGTITPHT F A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD +KM V LI P+A E G+RFA+REGG+TVGAGV+  I++
Sbjct:  246 VEIVGLKDTAKTTVTGVEMFRKLLDEGRAGENIGALLRGTKRDDVERGQVLAKPGTITPHTVFEAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTC-----ELPEGVEMVMPGDNVKMTVTLIAPIAMEDGLRFAVREGGRTVGAGVVAKIVQ 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPB (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain BS1) GN=tuf PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.865e-53
Identity = 102/157 (64.97%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+LVG+K T+   VTG+EMFQK LD+  AGDN GLL RGV K +I+RGMV+AKPGTITPHTKF A VY+LKKEEGGRH+PFF  YRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  242 VELVGIKPTKKTVVTGIEMFQKILDQGQAGDNAGLLFRGVGKDEIERGMVVAKPGTITPHTKFKAEVYILKKEEGGRHTPFFNNYRPQFYFRTTDVTGAVT-----LPEGVEMVMPGDNLSIEVELIVPIAMDENLRFAIREGGRTVGAGTVTQIIE 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_NEIGO (Elongation factor Tu OS=Neisseria gonorrhoeae GN=tuf PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 100/156 (64.10%), Postives = 125/156 (80.13%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAK GTITPHTKF A VYVL KEEGG H+PFFA YRPQFY RTTDVTG ++      ++  +MVMPG+ + + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  243 IEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKRGTITPHTKFKAEVYVLSKEEGGPHTPFFANYRPQFYFRTTDVTGTIT-----LEKGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DEISP (Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL++T+  TVTG+EM +K LD  MAGDNVG+LLRGV + D++RG VLAKPG+I PHTKF A VYVL K+EGGRHS FF GYRPQFY RTTDVTG V     +  E  +MVMPGD I  VVELI P+A E+G+RFAIREGG+TVGAGV+  ++E
Sbjct:  254 VEIIGLRDTKKTTVTGIEMHRKLLDSGMAGDNVGVLLRGVARDDVERGQVLAKPGSIKPHTKFEASVYVLSKDEGGRHSAFFGGYRPQFYFRTTDVTGVV-----ELPEGVEMVMPGDNITFVVELIKPIAMEEGLRFAIREGGRTVGAGVVAKVLE 405          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CLONN (Elongation factor Tu OS=Clostridium novyi (strain NT) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 105/158 (66.46%), Postives = 125/158 (79.11%), Query Frame = 3
Query:    6 VDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V +VG+KE     T+TGVEMF+K LDEAMAGDN+G LLRGVQ+ +I+RG VLAKPG++TPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG ++       E  +MVMPGD I M VELI PVA E  +RFAIREGG+TVG+GV+ SI+E
Sbjct:  241 VQIVGMKEEIGKTTITGVEMFRKMLDEAMAGDNIGALLRGVQRDEIERGQVLAKPGSVTPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSIA-----LPEGVEMVMPGDHIDMNVELITPVAMENNLRFAIREGGRTVGSGVVTSIVE 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 100/157 (63.69%), Postives = 125/157 (79.62%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+LVG++ T+   VTG+EMF+K LD+  AGDN GLLLRGV K +++RGMV+AKPG+ITPHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V     +  +  +MVMPGD + +  ELI P+A ++G+RFAIREGG+TVGAG + SIIE
Sbjct:  242 VELVGIRPTKKSVVTGIEMFRKLLDQGEAGDNAGLLLRGVNKDELERGMVIAKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSV-----NLPDGVEMVMPGDNLSIEAELIAPIAMDEGLRFAIREGGRTVGAGTVTSIIE 393          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_AERHH4.491e-5364.74Elongation factor Tu OS=Aeromonas hydrophila subsp... [more]
EFTU2_ROSCS4.491e-5363.75Elongation factor Tu 2 OS=Roseiflexus castenholzii... [more]
EFTU1_ROSCS4.491e-5363.75Elongation factor Tu 1 OS=Roseiflexus castenholzii... [more]
EFTU_NITOC5.865e-5362.42Elongation factor Tu OS=Nitrosococcus oceani (stra... [more]
EFTU_CHRSD5.865e-5364.33Elongation factor Tu OS=Chromohalobacter salexigen... [more]
EFTU_CHLPB5.865e-5364.97Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_NEIGO7.660e-5364.10Elongation factor Tu OS=Neisseria gonorrhoeae GN=t... [more]
EFTU_DEISP7.660e-5364.33Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 ... [more]
EFTU_CLONN7.660e-5366.46Elongation factor Tu OS=Clostridium novyi (strain ... [more]
EFTU_CHLT37.660e-5363.69Elongation factor Tu OS=Chloroherpeton thalassium ... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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