DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BAUCH (Elongation factor Tu OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=tuf PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 97/157 (61.78%), Postives = 125/157 (79.62%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++G+K T   T TGVEMF+K LDE  AG+N+G+LLRGV++ D++RG VLAKPG+I PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +   + +MVMPGD IKM+V LI P+A +QG+RFAIREGG+TVGAG++  IIE
Sbjct:  243 VEIIGIKNTTKTTCTGVEMFRKLLDEGRAGENIGVLLRGVKRDDVERGQVLAKPGSIKPHTKFASEVYILNKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPIDVEMVMPGDNIKMIVNLIAPIAMDQGLRFAIREGGRTVGAGIVTDIIE 394
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSS1 (Elongation factor Tu 2 OS=Roseiflexus sp. (strain RS-1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 101/160 (63.12%), Postives = 129/160 (80.62%), Query Frame = 3 
Query:    3 TVDLVGL--KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            TV+++G+  +  R   VTGVEMFQKTLDE +AGDNVG+LLRG+++ +++RG VLA PG+I PH  F A VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +        E  +MVMPGD I+M VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  247 TVEIIGMTHEAPRRTVVTGVEMFQKTLDEGIAGDNVGVLLRGIERTEVERGQVLAAPGSIKPHATFKANVYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAI-----HLPEGVEMVMPGDNIEMTVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_VIBPA (Elongation factor Tu OS=Vibrio parahaemolyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 102/157 (64.97%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V +VG+K+T   T TGVEMF+K LDE  AG+NVG LLRG ++ +++RG VLAKPG+ITPHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD I+MVVELI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  243 VAIVGIKDTTTTTCTGVEMFRKLLDEGRAGENVGALLRGTKRDEVERGQVLAKPGSITPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGDIS-----LPEGVEMVMPGDNIQMVVELIAPIAMDEGLRFAIREGGRTVGAGVVAKIFE 394
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHIFL (Elongation factor Tu OS=Shigella flexneri GN=tufA PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHIDS (Elongation factor Tu OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHIBS (Elongation factor Tu OS=Shigella boydii serotype 4 (strain Sb227) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SALTY (Elongation factor Tu OS=Salmonella typhimurium GN=tufA PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SALTI (Elongation factor Tu OS=Salmonella typhi GN=tufA PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SALPB (Elongation factor Tu OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SALPA (Elongation factor Tu OS=Salmonella paratyphi A GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BAUCH7.660e-5361.78Elongation factor Tu OS=Baumannia cicadellinicola ... [more]
EFTU2_ROSS17.660e-5363.13Elongation factor Tu 2 OS=Roseiflexus sp. (strain ... [more]
EFTU_VIBPA1.000e-5264.97Elongation factor Tu OS=Vibrio parahaemolyticus GN... [more]
EFTU_SHIFL1.000e-5263.46Elongation factor Tu OS=Shigella flexneri GN=tufA ... [more]
EFTU_SHIDS1.000e-5263.46Elongation factor Tu OS=Shigella dysenteriae serot... [more]
EFTU_SHIBS1.000e-5263.46Elongation factor Tu OS=Shigella boydii serotype 4... [more]
EFTU_SALTY1.000e-5263.46Elongation factor Tu OS=Salmonella typhimurium GN=... [more]
EFTU_SALTI1.000e-5263.46Elongation factor Tu OS=Salmonella typhi GN=tufA P... [more]
EFTU_SALPB1.000e-5263.46Elongation factor Tu OS=Salmonella paratyphi B (st... [more]
EFTU_SALPA1.000e-5263.46Elongation factor Tu OS=Salmonella paratyphi A GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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