DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BACST (Elongation factor Tu OS=Bacillus stearothermophilus GN=tuf PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 99/158 (62.66%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    6 VDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL  E +  TVTGVEMF+K LD+A AGDN+G LLRGV + +++RG VLAKPG+ITPHTKF A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG ++       E  +MVMPGD ++M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  243 VEIIGLSDEPKATTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVLAKPGSITPHTKFKAQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIIT-----LPEGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BACLD (Elongation factor Tu OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 102/158 (64.56%), Postives = 122/158 (77.22%), Query Frame = 3
Query:    6 VDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL+E  +  TVTGVEMF+K LD A AGDN+G LLRGV + +IQRG VLA+PGTITPH KF A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +        E  +MVMPGD I+M VELI  +A E G RF+IREGG+TVG+GV+ SIIE
Sbjct:  244 VEIIGLQEENKKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREEIQRGQVLAQPGTITPHKKFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGII-----QLPEGVEMVMPGDNIEMTVELISTIAIEDGTRFSIREGGRTVGSGVVSSIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BACHD (Elongation factor Tu OS=Bacillus halodurans GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 99/156 (63.46%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 470
            V+++GL+E  +  TVTGVEMF+K LD A AGDN+G LLRGV + ++QRG VLAKPGTITPHT F A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +        +  +MVMPGD ++M VELI P+A E+G +F+IREGG+TVGAGV+ SI
Sbjct:  244 VEIIGLEEEAKKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREEVQRGQVLAKPGTITPHTNFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGII-----QLPDGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGVVASI 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BACA2 (Elongation factor Tu OS=Bacillus amyloliquefaciens (strain FZB42) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 101/158 (63.92%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    6 VDLVGLKETRN-FTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL+E  +  TVTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPGTITPH+KF A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +     +  E  +MVMPGD  +M+VELI  +A E+G RF+IREGG+TVG+GV+ +I E
Sbjct:  244 VEIIGLQEENSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGII-----NLPEGVEMVMPGDNTEMIVELISTIAIEEGTRFSIREGGRTVGSGVVSTITE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_WOLTR (Elongation factor Tu 2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 93/157 (59.24%), Postives = 125/157 (79.62%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            ++++GLK T+  T TGVEMF+K L++  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQFY+RTTDVTG +  +     E  +MVMPGD + + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  239 IEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----EGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 390          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_RHOPS (Elongation factor Tu 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+++T+  T TGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD I M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNIGCLLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_NITEC (Elongation factor Tu 2 OS=Nitrosomonas eutropha (strain C91) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 96/157 (61.15%), Postives = 120/157 (76.43%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL+ T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPG+I PHTKF A +YVL KEEGGRH+PFFAGYRPQFY RTTDVTG +     +     +MVMPGD I + V LI P+A   G+RFAIREGG+TVGAGV+  +IE
Sbjct:  245 IEIVGLRPTIKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVLAKPGSILPHTKFSAEIYVLSKEEGGRHTPFFAGYRPQFYFRTTDVTGSI-----ELPAGVEMVMPGDNISVNVNLIAPIAMSDGLRFAIREGGRTVGAGVVAKVIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_CAUSK (Elongation factor Tu 2 OS=Caulobacter sp. (strain K31) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG++  +  T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+ITPHTKF+A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG +        E  +M+MPGD  ++ VELI P+A +QG+RFAIREGG+TVGAGV+  I+E
Sbjct:  245 VEIVGIRAVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIK-----LREGVEMIMPGDNAELDVELITPIAMDQGLRFAIREGGRTVGAGVVAKIVE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_YERPN (Elongation factor Tu 1 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 96/157 (61.15%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+ +T   T TGVEMF+K LDE  AG+NVG+LLRG ++ D+QRG VLAKPG+I PHTKF + VY+L K+EGGRH+PFF GYRPQFY RT DVTG +     +  E  +MVMPGD + MVV LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  243 VEIVGIIDTIKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVQRGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTIDVTGTI-----ELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_WOLTR (Elongation factor Tu 1 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 93/157 (59.24%), Postives = 125/157 (79.62%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            ++++GLK T+  T TGVEMF+K L++  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQFY+RTTDVTG +  +     E  +MVMPGD + + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  246 IEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----EGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 397          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BACST2.086e-5062.66Elongation factor Tu OS=Bacillus stearothermophilu... [more]
EFTU_BACLD2.086e-5064.56Elongation factor Tu OS=Bacillus licheniformis (st... [more]
EFTU_BACHD2.086e-5063.46Elongation factor Tu OS=Bacillus halodurans GN=tuf... [more]
EFTU_BACA22.086e-5063.92Elongation factor Tu OS=Bacillus amyloliquefaciens... [more]
EFTU2_WOLTR2.086e-5059.24Elongation factor Tu 2 OS=Wolbachia sp. subsp. Bru... [more]
EFTU2_RHOPS2.086e-5060.51Elongation factor Tu 2 OS=Rhodopseudomonas palustr... [more]
EFTU2_NITEC2.086e-5061.15Elongation factor Tu 2 OS=Nitrosomonas eutropha (s... [more]
EFTU2_CAUSK2.086e-5059.87Elongation factor Tu 2 OS=Caulobacter sp. (strain ... [more]
EFTU1_YERPN2.086e-5061.15Elongation factor Tu 1 OS=Yersinia pestis bv. Anti... [more]
EFTU1_WOLTR2.086e-5059.24Elongation factor Tu 1 OS=Wolbachia sp. subsp. Bru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
back to top