DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOPS (Elongation factor Tu 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+++T+  T TGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD I M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNIGCLLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOFD (Elongation factor Tu 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 93/156 (59.62%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+ +T+  T TGVEMF+K LD+  AGDNVG+LLRG ++ D+QRG VL KPG+I PHT F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +  E  +MVMPGD + ++V+LI P+A E+G+RFAIREGGKTVGAGV+  II
Sbjct:  245 IEIVGIHDTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLCKPGSIKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPEGKEMVMPGDNVSIIVKLINPIAMEEGLRFAIREGGKTVGAGVVAKII 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_CAUSK (Elongation factor Tu 1 OS=Caulobacter sp. (strain K31) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG++  +  T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+ITPHTKF+A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG +        E  +M+MPGD  ++ VELI P+A +QG+RFAIREGG+TVGAGV+  I+E
Sbjct:  245 VEIVGIRAVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIK-----LREGVEMIMPGDNAELDVELITPIAMDQGLRFAIREGGRTVGAGVVAKIVE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_POLSQ (Elongation factor Tu OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 96/156 (61.54%), Postives = 123/156 (78.85%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            ++++G+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPG+ITPHT F A VY+L K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  I+
Sbjct:  245 IEIIGIKPTLKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHTHFTAEVYILGKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVTITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_OCHA4 (Elongation factor Tu OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K T   TVTGVEMF+K LD+  AGDN+G L+RGV + D++RG VL KPG++ PHTKF A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAG++ SIIE
Sbjct:  240 VEIVGIKATAKTTVTGVEMFRKLLDQGQAGDNIGALIRGVGREDVERGQVLCKPGSVKPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNVAMDVTLIVPIAMEEKLRFAIREGGRTVGAGIVSSIIE 391          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_OCEIH (Elongation factor Tu OS=Oceanobacillus iheyensis GN=tuf PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 101/156 (64.74%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRN-FTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 470
            V+++GL E  +  TVTGVEMF+K LD A AGDN+G LLRGV + DI RG VLAKPG+ITPHT F A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +     +  E ++MVMPGD I+M VELI P+A E G RF+IREGG+TVG+GV+ SI
Sbjct:  243 VEIIGLAEDASKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREDINRGQVLAKPGSITPHTNFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGVI-----ELPEGTEMVMPGDNIEMTVELISPIAIEDGTRFSIREGGRTVGSGVVSSI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_MESSB (Elongation factor Tu OS=Mesorhizobium sp. (strain BNC1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG++ T   TVTGVEMF+K LD+  AGDN+G LLRG+ +  ++RG VLAKPG++TPHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAG++ SI E
Sbjct:  240 VEIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALLRGIDREGVERGQVLAKPGSVTPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNVTMDVTLIVPIAMEERLRFAIREGGRTVGAGIVASITE 391          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_GYMST (Elongation factor Tu, chloroplastic (Fragment) OS=Gymnochlora stellata GN=tufA PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 94/137 (68.61%), Postives = 119/137 (86.86%), Query Frame = 3
Query:    3 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-ESKMVMPGDRIKMVVELIMPVACEQG 410
            TV++VGLKETR+ TVTG++MFQK L E++AGDNVG+LLRG+QK DIQRGMV+A+PG+ITPH  F A VYVL KEEGGRH+PF +GYRPQFY+RTTDVTG+V S+ +D+D+ E KMV+PGDR+ M VEL+ P+A E+G
Sbjct:  227 TVEIVGLKETRSTTVTGLKMFQKMLQESIAGDNVGMLLRGIQKTDIQRGMVIAQPGSITPHVSFEAQVYVLTKEEGGRHTPFLSGYRPQFYVRTTDVTGKVESLKSDEDKSEMKMVVPGDRVTMSVELVQPIAIEKG 363          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_COLP3 (Elongation factor Tu OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 95/156 (60.90%), Postives = 123/156 (78.85%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+++T+  T TGVEMF+K LDE  AG+N G+LLRG+++ D++RG VL  PG+I PHTKF + VYVL K+EGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD +K VVELI PVA ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  243 VEVVGIRDTQKSTCTGVEMFRKLLDEGRAGENCGVLLRGLKREDVERGQVLCAPGSILPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNLKFVVELINPVAMDEGLRFAIREGGRTVGAGVVSKIM 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_ACIAC (Elongation factor Tu OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 93/156 (59.62%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+++T+  T TGVEMF+K LD+  AGDNVGLLLRG ++ D++RG VL KPG+I PHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +   + +MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPADKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGRTVGAGVVAKII 395          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_RHOPS2.086e-5060.51Elongation factor Tu 1 OS=Rhodopseudomonas palustr... [more]
EFTU1_RHOFD2.086e-5059.62Elongation factor Tu 1 OS=Rhodoferax ferrireducens... [more]
EFTU1_CAUSK2.086e-5059.87Elongation factor Tu 1 OS=Caulobacter sp. (strain ... [more]
EFTU_POLSQ2.724e-5061.54Elongation factor Tu OS=Polynucleobacter sp. (stra... [more]
EFTU_OCHA42.724e-5060.51Elongation factor Tu OS=Ochrobactrum anthropi (str... [more]
EFTU_OCEIH2.724e-5064.74Elongation factor Tu OS=Oceanobacillus iheyensis G... [more]
EFTU_MESSB2.724e-5060.51Elongation factor Tu OS=Mesorhizobium sp. (strain ... [more]
EFTU_GYMST2.724e-5068.61Elongation factor Tu, chloroplastic (Fragment) OS=... [more]
EFTU_COLP32.724e-5060.90Elongation factor Tu OS=Colwellia psychrerythraea ... [more]
EFTU_ACIAC2.724e-5059.62Elongation factor Tu OS=Acidovorax avenae subsp. c... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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