DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_RHOFD (Elongation factor Tu 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 92/156 (58.97%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+ +T+  T TGVEMF+K LD+  AGDNVG+LLRG ++ D+QRG VL KPG+I PHT F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +  E  +MVMPGD + ++V+LI P+A E+G+RFAIREGGKTVGAGV+  +I
Sbjct:  245 IEIVGIHDTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLCKPGSIKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPEGKEMVMPGDNVSIIVKLINPIAMEEGLRFAIREGGKTVGAGVVAKVI 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_PHOLL (Elongation factor Tu 2 OS=Photorhabdus luminescens subsp. laumondii GN=tuf2 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 96/156 (61.54%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I+M V LI P+A +QG+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMKVTLIAPIAMDQGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_BARBK (Elongation factor Tu 2 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ T   TVTGVEMF+K LD+  AGDN+G LLRG+ +  I+RG VLAKPG++TPHTKF A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAG++  IIE
Sbjct:  240 IEIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALLRGIDREGIERGQVLAKPGSVTPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVAMDVSLIVPIAMEEKLRFAIREGGRTVGAGIVSKIIE 391          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_PHOLL (Elongation factor Tu 1 OS=Photorhabdus luminescens subsp. laumondii GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 96/156 (61.54%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I+M V LI P+A +QG+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMKVTLIAPIAMDQGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_BARBK (Elongation factor Tu 1 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ T   TVTGVEMF+K LD+  AGDN+G LLRG+ +  I+RG VLAKPG++TPHTKF A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAG++  IIE
Sbjct:  240 IEIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALLRGIDREGIERGQVLAKPGSVTPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVAMDVSLIVPIAMEEKLRFAIREGGRTVGAGIVSKIIE 391          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHESH (Elongation factor Tu OS=Shewanella sediminis (strain HAW-EB3) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 94/156 (60.26%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLA PG+ITPHT F + +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M V LI P+A ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  243 VEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKREDVERGQVLAAPGSITPHTTFKSEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVAMTVTLICPIAMDEGLRFAIREGGRTVGAGVVAEIV 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHEDO (Elongation factor Tu OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 98/156 (62.82%), Postives = 119/156 (76.28%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKP +I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGVKATTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPASINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIYPIAMDDGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PSEPW (Elongation factor Tu OS=Pseudomonas putida (strain W619) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTTTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PSEPG (Elongation factor Tu OS=Pseudomonas putida (strain GB-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTTTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PSEPF (Elongation factor Tu OS=Pseudomonas fluorescens (strain Pf0-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTTTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_RHOFD2.724e-5058.97Elongation factor Tu 2 OS=Rhodoferax ferrireducens... [more]
EFTU2_PHOLL2.724e-5061.54Elongation factor Tu 2 OS=Photorhabdus luminescens... [more]
EFTU2_BARBK2.724e-5059.87Elongation factor Tu 2 OS=Bartonella bacilliformis... [more]
EFTU1_PHOLL2.724e-5061.54Elongation factor Tu 1 OS=Photorhabdus luminescens... [more]
EFTU1_BARBK2.724e-5059.87Elongation factor Tu 1 OS=Bartonella bacilliformis... [more]
EFTU_SHESH3.558e-5060.26Elongation factor Tu OS=Shewanella sediminis (stra... [more]
EFTU_SHEDO3.558e-5062.82Elongation factor Tu OS=Shewanella denitrificans (... [more]
EFTU_PSEPW3.558e-5061.78Elongation factor Tu OS=Pseudomonas putida (strain... [more]
EFTU_PSEPG3.558e-5061.78Elongation factor Tu OS=Pseudomonas putida (strain... [more]
EFTU_PSEPF3.558e-5061.78Elongation factor Tu OS=Pseudomonas fluorescens (s... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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