DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SACD2 (Elongation factor Tu OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 93/156 (59.62%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+++T   T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VL+KPG++TPHT F + +YVL K+EGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD ++M V LI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  256 LEIVGIRDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVLSKPGSVTPHTTFQSEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAC-----ELPEGVEMVMPGDNVQMTVTLIAPIAMEEGLRFAIREGGRTVGAGVVAKII 406          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_ROSDO (Elongation factor Tu OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 94/157 (59.87%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K+T++ T TGVEMF+K LD   AGDN+G LLRG+ +  ++RG VL KPG++ PHTKF A  Y+L K+EGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD +   VELI P+A EQG+RFAIREGG+TVGAGV+  I E
Sbjct:  240 IEIVGIKDTQSTTCTGVEMFRKLLDRGEAGDNIGALLRGIDREAVERGQVLCKPGSVKPHTKFEAEAYILTKDEGGRHTPFFANYRPQFYFRTTDVTGTVQLA-----EGTEMVMPGDNVSFGVELIAPIAMEQGLRFAIREGGRTVGAGVVSKITE 391          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPB (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisB18) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T+   VTGVEMF+K LD+  AGDN+G LLRG ++ +++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD I M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 IEIVGLRDTQKTIVTGVEMFRKLLDQGQAGDNIGALLRGTKREEVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPA (Elongation factor Tu OS=Rhodopseudomonas palustris GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+++T+  T TGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD I M V LI+P+A E+ +RFAIREGG+TVGAGV+ +IIE
Sbjct:  245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVAAIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_POLSJ (Elongation factor Tu OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 93/156 (59.62%), Postives = 119/156 (76.28%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+ +T+  T TGVEMF+K LD+  AGDNVG+LLRG ++ D+QRG VL KPG+I PHT F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +  E  +MVMPGD + + V+LI P+A E+G+RFAIREGGKTVGAGV+  II
Sbjct:  245 IEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLCKPGSIKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPEGKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGKTVGAGVVAKII 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGE (Elongation factor Tu OS=Mycoplasma genitalium GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 93/157 (59.24%), Postives = 120/157 (76.43%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGLK  R   VTG+EMF+K LD AMAGDN G+LLRGV++ +++RG VLAKPG+I PH KF A +Y LKKEEGGRH+ F  GYRPQFY RTTDVTG ++       E ++MV+PGD   + VELI P+ACE+G +F+IREGG+TVGAG +  ++E
Sbjct:  243 VEIVGLKPIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGVERKEVERGQVLAKPGSIKPHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSIALA-----ENTEMVLPGDNASITVELIAPIACEKGSKFSIREGGRTVGAGTVTEVLE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESRM (Elongation factor Tu OS=Desulfotomaculum reducens (strain MI-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 103/158 (65.19%), Postives = 121/158 (76.58%), Query Frame = 3
Query:    6 VDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGL E  R   VTGVEMF+K LD A AGDN+G LLRGV + +I+RG VLAKPG+I PHTK+ A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V        E  +MVMPGD IK+ V+LI P+A E+G+RFAIREGG+TVGAGV+  I E
Sbjct:  248 VEIVGLNEKPRKTVVTGVEMFRKLLDFAQAGDNIGALLRGVDRKEIERGQVLAKPGSINPHTKYSAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGIV-----QLPEGVEMVMPGDNIKVDVDLITPIAIEEGLRFAIREGGRTVGAGVVTGIRE 400          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJR (Elongation factor Tu OS=Campylobacter jejuni (strain RM1221) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    3 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            T+++VG+K+T+  TVTGVEMF+K +D+  AGDNVG+LLRG +K ++ RGMVLAKP +ITPHT F A VY+L K+EGGRH+PFF  YRPQFY+RTTDVTG +        +  +MVMPG+ +++ V LI PVA E+G RFAIREGGKTVG+GV+  II+
Sbjct:  247 TIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGSIKLA-----DGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSGVVSKIIK 399          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJJ (Elongation factor Tu OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    3 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            T+++VG+K+T+  TVTGVEMF+K +D+  AGDNVG+LLRG +K ++ RGMVLAKP +ITPHT F A VY+L K+EGGRH+PFF  YRPQFY+RTTDVTG +        +  +MVMPG+ +++ V LI PVA E+G RFAIREGGKTVG+GV+  II+
Sbjct:  247 TIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGSIKLA-----DGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSGVVSKIIK 399          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJE (Elongation factor Tu OS=Campylobacter jejuni GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    3 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            T+++VG+K+T+  TVTGVEMF+K +D+  AGDNVG+LLRG +K ++ RGMVLAKP +ITPHT F A VY+L K+EGGRH+PFF  YRPQFY+RTTDVTG +        +  +MVMPG+ +++ V LI PVA E+G RFAIREGGKTVG+GV+  II+
Sbjct:  247 TIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGSIKLA-----DGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSGVVSKIIK 399          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SACD24.647e-5059.62Elongation factor Tu OS=Saccharophagus degradans (... [more]
EFTU_ROSDO4.647e-5059.87Elongation factor Tu OS=Roseobacter denitrificans ... [more]
EFTU_RHOPB4.647e-5060.51Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RHOPA4.647e-5059.87Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_POLSJ4.647e-5059.62Elongation factor Tu OS=Polaromonas sp. (strain JS... [more]
EFTU_MYCGE4.647e-5059.24Elongation factor Tu OS=Mycoplasma genitalium GN=t... [more]
EFTU_DESRM4.647e-5065.19Elongation factor Tu OS=Desulfotomaculum reducens ... [more]
EFTU_CAMJR4.647e-5060.13Elongation factor Tu OS=Campylobacter jejuni (stra... [more]
EFTU_CAMJJ4.647e-5060.13Elongation factor Tu OS=Campylobacter jejuni subsp... [more]
EFTU_CAMJE4.647e-5060.13Elongation factor Tu OS=Campylobacter jejuni GN=tu... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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