DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJD (Elongation factor Tu OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    3 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            T+++VG+K+T+  TVTGVEMF+K +D+  AGDNVG+LLRG +K ++ RGMVLAKP +ITPHT F A VY+L K+EGGRH+PFF  YRPQFY+RTTDVTG +        +  +MVMPG+ +++ V LI PVA E+G RFAIREGGKTVG+GV+  II+
Sbjct:  247 TIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGSIKLA-----DGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSGVVSKIIK 399          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJ8 (Elongation factor Tu OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    3 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            T+++VG+K+T+  TVTGVEMF+K +D+  AGDNVG+LLRG +K ++ RGMVLAKP +ITPHT F A VY+L K+EGGRH+PFF  YRPQFY+RTTDVTG +        +  +MVMPG+ +++ V LI PVA E+G RFAIREGGKTVG+GV+  II+
Sbjct:  247 TIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGSIKLA-----DGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSGVVSKIIK 399          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BUCAT (Elongation factor Tu OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKKTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGIEMVMPGDNIKMTVTLINPIAMADGLRFAIREGGRTVGAGVVSKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BUCAP (Elongation factor Tu OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tuf PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKKTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGVEMVMPGDNIKMTVTLIHPIAMADGLRFAIREGGRTVGAGVVSKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BUCAI (Elongation factor Tu OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=tuf PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKKTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGIEMVMPGDNIKMTVTLINPIAMADGLRFAIREGGRTVGAGVVSKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BUCA5 (Elongation factor Tu OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKKTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGIEMVMPGDNIKMTVTLINPIAMADGLRFAIREGGRTVGAGVVSKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEFN (Elongation factor Tu 2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF+ RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGVRPTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFFFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIYPIAMDDGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEFN (Elongation factor Tu 1 OS=Shewanella frigidimarina (strain NCIMB 400) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.647e-50
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF+ RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGVRPTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFFFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIYPIAMDDGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_RALEH (Elongation factor Tu OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.069e-50
Identity = 96/157 (61.15%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVGLLLRG ++ D++RG VL KPG+I PHT F   VY+L K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  245 IEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKILD 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_JANMA (Elongation factor Tu OS=Janthinobacterium sp. (strain Marseille) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.069e-50
Identity = 96/157 (61.15%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+++T+  T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+I PH  F   +YVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CAMJD4.647e-5060.13Elongation factor Tu OS=Campylobacter jejuni subsp... [more]
EFTU_CAMJ84.647e-5060.13Elongation factor Tu OS=Campylobacter jejuni subsp... [more]
EFTU_BUCAT4.647e-5062.18Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]
EFTU_BUCAP4.647e-5062.18Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]
EFTU_BUCAI4.647e-5062.18Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]
EFTU_BUCA54.647e-5062.18Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]
EFTU2_SHEFN4.647e-5062.18Elongation factor Tu 2 OS=Shewanella frigidimarina... [more]
EFTU1_SHEFN4.647e-5062.18Elongation factor Tu 1 OS=Shewanella frigidimarina... [more]
EFTU_RALEH6.069e-5061.15Elongation factor Tu OS=Ralstonia eutropha (strain... [more]
EFTU_JANMA6.069e-5061.15Elongation factor Tu OS=Janthinobacterium sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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