DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BLOFL (Elongation factor Tu OS=Blochmannia floridanus GN=tuf PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.069e-50
Identity = 93/156 (59.62%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TG+EMF+K LDE  AG+NVG+LLRG ++ +++RG VL+KPG I PH+ F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  +E +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTVKTTCTGIEMFRKLLDEGRAGENVGVLLRGTKRDEVERGQVLSKPGCIKPHSNFESEVYILNKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPKEVEMVMPGDNIKMVVHLISPIAMDDGLRFAIREGGRTVGAGVVSRVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BART1 (Elongation factor Tu OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.069e-50
Identity = 93/157 (59.24%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            ++++G++ T   TVTGVEMF+K LD+  AGDN+G LLRGV +  I+RG VLAKPG++TPHT+F A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAG++  IIE
Sbjct:  240 IEIIGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALLRGVDREGIERGQVLAKPGSVTPHTRFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVAMDVSLIVPIAMEEKLRFAIREGGRTVGAGIVSKIIE 391          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 97/156 (62.18%), Postives = 123/156 (78.85%), Query Frame = 3
Query:    6 VDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 470
            V+++G++E ++  TVTGVEMF+K LDE  AG+NVGLLLRG ++ D++RGMV+AKPGT TPHT F A VY+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD  +M VELI P+A ++G+RFAIREGG+TVGAG +  I
Sbjct:  245 VEILGIREASQKSTVTGVEMFRKLLDEGQAGENVGLLLRGTKREDVERGMVVAKPGTTTPHTNFEASVYILSKEEGGRHTPFFNNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNTEMAVELIQPIAMDEGLRFAIREGGRTVGAGRVTKI 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_NITHX (Elongation factor Tu OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 94/157 (59.87%), Postives = 120/157 (76.43%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ T+  TVTGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V          ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 IEIVGIRPTQKTTVTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPAGTEMVMPGDNVAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESVM (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 95/157 (60.51%), Postives = 120/157 (76.43%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K+T   T TGVEMF+K LD+  AGDN+G LLRG+++ D++RG VLA P +I PH KF A VYVL KEEGGRH+PFF+GYRPQFY RTTD+TG ++       +  +MVMPGD     VELI P+A EQG+RFAIREGG+TVGAGV+  I+E
Sbjct:  246 VEIVGIKDTVKSTCTGVEMFRKLLDQGQAGDNIGALLRGIKREDVERGQVLAAPKSIKPHRKFKAEVYVLSKEEGGRHTPFFSGYRPQFYFRTTDITGIIALA-----DGVEMVMPGDNSTFTVELIAPIAMEQGLRFAIREGGRTVGAGVVSEILE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESHY (Elongation factor Tu OS=Desulfitobacterium hafniense (strain Y51) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 100/158 (63.29%), Postives = 122/158 (77.22%), Query Frame = 3
Query:    6 VDLVGLKETRNFTV-TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL E    TV TGVEMF+K LD+A AGDN+G LLRGV + DI+RG VLAK G+I PHTKF   V+VL KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGDR+ +  E+I P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  248 IEIVGLTEAPRKTVCTGVEMFRKLLDQAQAGDNIGALLRGVDRKDIERGQVLAKTGSIKPHTKFTGEVFVLSKEEGGRHTPFFNNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDRVTITCEIISPIAMEEGLRFAIREGGRTVGAGVVVSIIE 400          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESHD (Elongation factor Tu OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 100/158 (63.29%), Postives = 122/158 (77.22%), Query Frame = 3
Query:    6 VDLVGLKETRNFTV-TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL E    TV TGVEMF+K LD+A AGDN+G LLRGV + DI+RG VLAK G+I PHTKF   V+VL KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGDR+ +  E+I P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  248 IEIVGLTEAPRKTVCTGVEMFRKLLDQAQAGDNIGALLRGVDRKDIERGQVLAKTGSIKPHTKFTGEVFVLSKEEGGRHTPFFNNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDRVTITCEIISPIAMEEGLRFAIREGGRTVGAGVVVSIIE 400          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BORGA (Elongation factor Tu OS=Borrelia garinii GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 98/157 (62.42%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+KETR  TVTGVEMFQK L++  AGDNVGLLLRGV K DI+RG VL+ PGTITPH KF A +Y L KEEGGRH PFF GYRPQF+ RTTDVTG V+       E  +MVMPGD + +VVELI  +A ++ + FA+REGG+TV +G I  I+E
Sbjct:  244 VEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLSAPGTITPHKKFKASIYCLTKEEGGRHKPFFPGYRPQFFFRTTDVTGVVAL------EGKEMVMPGDNVDIVVELISSIAMDKNVEFAVREGGRTVASGRILEILE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BORAP (Elongation factor Tu OS=Borrelia afzelii (strain PKo) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 98/157 (62.42%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+KETR  TVTGVEMFQK L++  AGDNVGLLLRGV K DI+RG VL+ PGTITPH KF A +Y L KEEGGRH PFF GYRPQF+ RTTDVTG V+       E  +MVMPGD + +VVELI  +A ++ + FA+REGG+TV +G I  I+E
Sbjct:  244 VEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLSAPGTITPHKKFKASIYCLTKEEGGRHKPFFPGYRPQFFFRTTDVTGVVAL------EGKEMVMPGDNVDIVVELISSIAMDKNVEFAVREGGRTVASGRILEILE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_WOLPM (Elongation factor Tu 2 OS=Wolbachia pipientis wMel GN=tuf2 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 92/157 (58.60%), Postives = 124/157 (78.98%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            ++++GLK T+    TGVEMF+K LD+  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQFY+RTTDVTG +  +     +  +MVMPGD + + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  239 IEIIGLKATQKTICTGVEMFKKLLDKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----DGKEMVMPGDNVSVEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 390          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BLOFL6.069e-5059.62Elongation factor Tu OS=Blochmannia floridanus GN=... [more]
EFTU_BART16.069e-5059.24Elongation factor Tu OS=Bartonella tribocorum (str... [more]
EFTU_NOCSJ7.927e-5062.18Elongation factor Tu OS=Nocardioides sp. (strain B... [more]
EFTU_NITHX7.927e-5059.87Elongation factor Tu OS=Nitrobacter hamburgensis (... [more]
EFTU_DESVM7.927e-5060.51Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_DESHY7.927e-5063.29Elongation factor Tu OS=Desulfitobacterium hafnien... [more]
EFTU_DESHD7.927e-5063.29Elongation factor Tu OS=Desulfitobacterium hafnien... [more]
EFTU_BORGA7.927e-5062.42Elongation factor Tu OS=Borrelia garinii GN=tuf PE... [more]
EFTU_BORAP7.927e-5062.42Elongation factor Tu OS=Borrelia afzelii (strain P... [more]
EFTU2_WOLPM7.927e-5058.60Elongation factor Tu 2 OS=Wolbachia pipientis wMel... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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