DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_METFK (Elongation factor Tu 2 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 96/157 (61.15%), Postives = 121/157 (77.07%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGLK T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAK G+I PHTKF A +YVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +    ++MVMPGD + + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGLKPTIKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLAKVGSIKPHTKFTAEIYVLGKDEGGRHTPFFNGYRPQFYFRTTDVTGAV-----ELPAGTEMVMPGDNVSISVSLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_WOLPM (Elongation factor Tu 1 OS=Wolbachia pipientis wMel GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 92/157 (58.60%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            ++++GLK T+    TGVEMF+K LD+  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQFY+RTTDVTG +  +     +  +MVMPGD + + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  239 IEIIGLKATQKTICTGVEMFKKLLDKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----DGKEMVMPGDNVSVEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 390
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_METFK (Elongation factor Tu 1 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 96/157 (61.15%), Postives = 121/157 (77.07%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGLK T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAK G+I PHTKF A +YVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +    ++MVMPGD + + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGLKPTIKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLAKVGSIKPHTKFTAEIYVLGKDEGGRHTPFFNGYRPQFYFRTTDVTGAV-----ELPAGTEMVMPGDNVSISVSLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP5 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisA53) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 95/157 (60.51%), Postives = 120/157 (76.43%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LD+  AGDN+G LLRG ++ +++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD I M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 IEIVGLRDTVKTTCTGVEMFRKLLDQGQAGDNIGALLRGTKREEVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PARDP (Elongation factor Tu OS=Paracoccus denitrificans (strain Pd 1222) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ T+  T TGVEMF+K LD   AGDN+G LLRGV++  ++RG VLAKPG++TPHT+F A  Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD +K  VELI P+A E+ +RFAIREGG+TVGAGV+  I++
Sbjct:  240 LEIVGIRPTKKTTCTGVEMFRKLLDRGEAGDNIGALLRGVERDGVERGQVLAKPGSVTPHTEFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVK-----LPEGTEMVMPGDNLKFEVELIAPIAMEEKLRFAIREGGRTVGAGVVSKILK 391
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 98/157 (62.42%), Postives = 120/157 (76.43%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+LVG+++T     TGVEMF+K LDE  AGDNVGLLLRG ++  ++RG V+AKPGTITPHTKF A +Y L KEEGGRH+PFF+GYRPQF+ RTTDVTG +S       E  +M+MPGD   +  ELI P+A E+ +RFAIREGG+TVGAGVI  IIE
Sbjct:  246 VELVGIRDTTKTICTGVEMFRKLLDEGRAGDNVGLLLRGTKRDAVERGQVVAKPGTITPHTKFKAEIYCLSKEEGGRHTPFFSGYRPQFFFRTTDVTGVLS-----LPEGVEMIMPGDNAAITAELIAPIAMEKELRFAIREGGRTVGAGVIGEIIE 397
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESAD (Elongation factor Tu OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 94/157 (59.87%), Postives = 122/157 (77.71%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+++T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VL+ PG+I PHTKF A VYVL K+EGGRH+PFF+GYRPQFY RTTD+TG V+      DE  +MVMPGD     VE+I P+A + G+RFAIREGG+TVGAGV+  I+E
Sbjct:  246 VEIVGIRDTAKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKRDEVERGQVLSAPGSINPHTKFKAEVYVLSKDEGGRHTPFFSGYRPQFYFRTTDITGVVT-----LDEGVEMVMPGDNATFNVEMINPIAMDPGLRFAIREGGRTVGAGVVTEILE 397
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BORBZ (Elongation factor Tu OS=Borrelia burgdorferi (strain ZS7) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+KETR  TVTGVEMFQK L++  AGDNVGLLLRGV K DI+RG VL+ PGTITPH KF A +Y L KEEGGRH PFF GYRPQF+ RTTDVTG V+       E  +MVMPGD + ++VELI  +A ++ + FA+REGG+TV +G I  I+E
Sbjct:  244 VEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLSAPGTITPHKKFKASIYCLTKEEGGRHKPFFPGYRPQFFFRTTDVTGVVAL------EGKEMVMPGDNVDIIVELISSIAMDKNVEFAVREGGRTVASGRILEILE 394
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BORBU (Elongation factor Tu OS=Borrelia burgdorferi GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+KETR  TVTGVEMFQK L++  AGDNVGLLLRGV K DI+RG VL+ PGTITPH KF A +Y L KEEGGRH PFF GYRPQF+ RTTDVTG V+       E  +MVMPGD + ++VELI  +A ++ + FA+REGG+TV +G I  I+E
Sbjct:  244 VEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLSAPGTITPHKKFKASIYCLTKEEGGRHKPFFPGYRPQFFFRTTDVTGVVAL------EGKEMVMPGDNVDIIVELISSIAMDKNVEFAVREGGRTVASGRILEILE 394
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BDEBA (Elongation factor Tu OS=Bdellovibrio bacteriovorus GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ T+  TVTG+EMF+K LDE  AGDN G+LLRG +K D++RG VL KPGT+ PH KF A  Y+L KEEGGRH+PFF GYRPQFY RTTDVTG     +      ++MVMPGD+I++ VELI P+A E+ +RFAIREGG+TVGAGV+  I+E
Sbjct:  245 IEIVGIRPTQKTTVTGIEMFRKLLDEGQAGDNCGVLLRGTKKEDVERGQVLVKPGTVKPHKKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTG-----VCTLKAGTEMVMPGDKIEVSVELIAPIAMEKELRFAIREGGRTVGAGVVTEILE 396
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_METFK7.927e-5061.15Elongation factor Tu 2 OS=Methylobacillus flagella... [more]
EFTU1_WOLPM7.927e-5058.60Elongation factor Tu 1 OS=Wolbachia pipientis wMel... [more]
EFTU1_METFK7.927e-5061.15Elongation factor Tu 1 OS=Methylobacillus flagella... [more]
EFTU_RHOP51.035e-4960.51Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_PARDP1.035e-4959.87Elongation factor Tu OS=Paracoccus denitrificans (... [more]
EFTU_DESAH1.035e-4962.42Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_DESAD1.035e-4959.87Elongation factor Tu OS=Desulfovibrio salexigens (... [more]
EFTU_BORBZ1.035e-4961.78Elongation factor Tu OS=Borrelia burgdorferi (stra... [more]
EFTU_BORBU1.035e-4961.78Elongation factor Tu OS=Borrelia burgdorferi GN=tu... [more]
EFTU_BDEBA1.035e-4959.87Elongation factor Tu OS=Bdellovibrio bacteriovorus... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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