DC900267

Overview
NameDC900267
Unique NameDC900267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3495 contig Csv1_Contig3495:972..1533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900267 vs. ExPASy Swiss-Prot
Match: SYYC_XENTR (Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.598e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 GIKSHAMVLCASTSDNTK-VELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 281
            GI+S  M+LCAST    K VE ++PP  +  GER+   G+E GEP+  L PKKKV+E +QVD   + +L A +K   F T  G  T  +++ GSI
Sbjct:  433 GIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSI 527          
BLAST of DC900267 vs. ExPASy Swiss-Prot
Match: G4P1_YEAST (GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae GN=ARC1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 41/74 (55.41%), Postives = 47/74 (63.51%), Query Frame = 3
Query:    3 GIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGE-PDDVLNPKKKVWETVQVDLHTNTELVACYKD 221
            GIKS AMVLC S  D  KVE VEPPK +K G++V F GF  E P   LNPKKK+WE +Q    TN  L   +KD
Sbjct:  275 GIKSTAMVLCGSNDD--KVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTNDGLEVIFKD 346          
BLAST of DC900267 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 GIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 281
            G++S  M+LCAS    N +VE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  433 GVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 527          
BLAST of DC900267 vs. ExPASy Swiss-Prot
Match: SYYC_MOUSE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 3
Query:    3 GIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 281
            G+ S  M+LCAS    + +VE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  433 GVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGFVSCKSLKGGNI 527          
BLAST of DC900267 vs. ExPASy Swiss-Prot
Match: SYYC_HUMAN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 3
Query:    3 GIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 281
            G++S  M+LCAS    N +VE ++PP  +  GE V   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  433 GVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 527          
BLAST of DC900267 vs. ExPASy Swiss-Prot
Match: SYYC_RAT (Tyrosyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 3
Query:    3 GIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 281
            G+ S  M+LCAS    + +VE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + + VA +K   F T  G  +  S++ G+I
Sbjct:  433 GVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNI 527          
BLAST of DC900267 vs. ExPASy Swiss-Prot
Match: SYMC_CAEEL (Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:    3 GIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIP 227
            G++S AMV+CAS+ D  KVE++E P  +K G  V  P +   PD+ LNPKKK+WETV  DL  + E  A +K  P
Sbjct:  825 GVESRAMVMCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKGQP 897          
The following BLAST results are available for this feature:
BLAST of DC900267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SYYC_XENTR2.598e-1344.21Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus tr... [more]
G4P1_YEAST5.787e-1355.41GU4 nucleic-binding protein 1 OS=Saccharomyces cer... [more]
SYYC_PONAB9.871e-1341.05Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abel... [more]
SYYC_MOUSE2.872e-1240.00Tyrosyl-tRNA synthetase, cytoplasmic OS=Mus muscul... [more]
SYYC_HUMAN3.751e-1240.00Tyrosyl-tRNA synthetase, cytoplasmic OS=Homo sapie... [more]
SYYC_RAT4.899e-1240.00Tyrosyl-tRNA synthetase, cytoplasmic OS=Rattus nor... [more]
SYMC_CAEEL1.425e-1148.00Methionyl-tRNA synthetase, cytoplasmic OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionDC900267 VSS Citrus sinensis cDNA clone VS28610 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900267 ID=DC900267; Name=DC900267; organism=Citrus sinensis; type=EST; length=562bp
GGGGAATCAAATCACATGCAATGGTTCTTTGTGCTTCAACCAGTGATAAC
ACCAAGGTTGAATTGGTTGAGCCACCAAAATCTGCAAAAATTGGAGAAAG
AGTTGCATTTCCTGGGTTTGAAGGCGAGCCTGATGATGTGTTAAACCCTA
AGAAGAAGGTTTGGGAGACAGTGCAAGTGGATTTACACACTAACACCGAG
CTGGTGGCCTGCTATAAAGATATTCCTTTCACGACATCAGCTGGTATTTG
CACTGTTTCCTCCATTCAAAGTGGGTCTATACGGTAGCTCGACTTCTTCA
ATCATTGGAAAGCGAGAATTCCTAATCTTCTGATTGTGTTAACTTTGCTT
TTTTATCCTAGTGACTTTTTCTCGTTGTGTGAAATGTTGTATGTGGACAA
GAATTTTGTGTCAGTAGTAGACTAGATTATGTCGTGGCTTCATTAGTGTT
ACCTTTTCCCCTCATTAGAAGAAAACCCAATTGCCTTGAGCAATGAGCAG
TTTGAATTCACGATCTTATATACAAGGATTTATGTCAAGGGTTTGAACCC
AAGCTTCAGATT
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