Overview
Name DC900254
Unique Name DC900254
Type EST
Organism Citrus sinensis (Sweet orange)
Sequence length 642
Libraries
Library Name Type
VSS cdna_library
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900254 vs. ExPASy Swiss-Prot
Match:
ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)
HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 1 VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP 309
V+R G+DIT++ + + QA +G E+ID+ +L P+D T+ ASV KT ++LI E TGG GA + A+I+E F L+AP+ + D P P
Sbjct: 197 VVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTP 299
BLAST of DC900254 vs. ExPASy Swiss-Prot
Match:
ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)
HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 1 VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP 309
++R G+DIT++ + + QA +G E+ID+ +L P D T+ S++KT ++LI E TGG GA + A+I+E F L+AP+ + D P P
Sbjct: 197 IVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKPVDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTP 299
The following BLAST results are available for this feature:
BLAST of DC900254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 52
50 100 150 200 250 300 350 400 450 500 550 600 Expect = 4.23e-11 / Id = 37.86 Expect = 7.21e-11 / Id = 34.95 Sequence ODPB_ZYGCR ODPB_STAPU
Match Name E-value Identity Description
ODPB_ZYGCR 4.227e-11 37.86 Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAPU 7.209e-11 34.95 Pyruvate dehydrogenase E1 component subunit beta O... [more]
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Properties
Property Name Value
Genbank description DC900254 VSS Citrus sinensis cDNA clone VS28295 5, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>DC900254 ID=DC900254; Name=DC900254; organism=Citrus sinensis; type=EST; length=642bp GTGATTCGAGAAGGCAGTGACATAACACTTGTTGGCTGGGGAGCACAACT CTCTATCATGGAGCAGGCCTGTTTAGATGCTGAAAAGGAAGGAATTTCTT GTGAACTGATAGACCTGAAGACACTAATACCATGGGATAAGGAAACAGTA GAGGCCTCTGTCAGGAAAACCGGACGACTTCTTATTAGCCACGAAGCTCC GGTTACTGGAGGTTTTGGTGCTGAAATTTCTGCATCTATCCTTGAACGTT GTTTCTTAAGATTAGAAGCTCCAGTGGCTCGAGTTTGTGGTCTGGACACT CCCTTCCCTCTCGTTTTCGAACCATTCTACATGCCCACCAAGAATAAGAT ATTAGATGCAATCAAATCAACTGTAAATTACTAAGAGGGTAACCATCTCT ACTGCACAACTGCGGATACACAGGTCCAGAGATGAGTGAAATCCCTGCAA TAGTTTTGCAGGAGGGGAGGTACCAATGTTCCAATACAAACAAACAATAA GAAAGTTGTATACTCTCCGGAGTTGCTAATTGTTTGTAAACTGGTGGTAA TGTTATTGGACTGAGCATGCTCACTTACATTCTGCATGTTTGATATGACA AGTGCAAATGCCATTCTCATCAATGAAGTCCACTCTTTGTTT back to top