DC900252

Overview
NameDC900252
Unique NameDC900252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:160..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.187e-57
Identity = 104/138 (75.36%), Postives = 124/138 (89.86%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            MAN++SGMAV D+CKLKF+ELKAKR +RFIVFKIEEK +QV VE+LG+P ++Y+DF   LP  ECRYAV+D+DFVT ENCQKS+IFFI+WSPDT+RVRSKM+YAS+KDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:    1 MANSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.187e-57
Identity = 106/138 (76.81%), Postives = 123/138 (89.13%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            MANAASGMAV D+CKLKFLELK+KR YRFI+F+I+ +Q  V+VEKLG P +TY+DF ASLPA ECRYAV+D+DF+T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:    1 MANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQ--VVVEKLGNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.187e-57
Identity = 103/138 (74.64%), Postives = 126/138 (91.30%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            MAN+ASGMAV D+CKLKF ELK+KR++RFI FKI+E+ +QV+V++LG+P  TY+DF AS+PA ECRYAV+D+DFVT ENCQKS+IFFI+WSPDT++VRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:    1 MANSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.451e-55
Identity = 105/138 (76.09%), Postives = 119/138 (86.23%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            MANAASGMAV D+CKLKFLELKAKR YRFI+F+I+ +Q  V+VEKLG P + Y+DF   LP  ECRYAVYD+DF TAEN QKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K RA
Sbjct:    1 MANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQ--VVVEKLGSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.575e-54
Identity = 98/139 (70.50%), Postives = 121/139 (87.05%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            MAN+ASG+AV+D+CK KF ELK +R +RFIVFKI++K  ++ VE+LG+  + YEDFAA+LPA+ECRYAVYD DFVT ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ + RA+
Sbjct:    1 MANSASGLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.963e-54
Identity = 95/139 (68.35%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            MAN++SG+AV D+CK+KF +LKA+R++RFIVF+I++K  ++ V++LGEP Q Y DF  SLPA+ECRYA+YD DF T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ K R N
Sbjct:    1 MANSSSGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.952e-53
Identity = 94/139 (67.63%), Postives = 118/139 (84.89%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            MAN++SG+AV+D+CK+KF ELK++RT+RFIVF+I++   ++ V++LGEP Q Y DF  SLPA ECRYA+YD DF T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ + R N
Sbjct:    1 MANSSSGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.342e-50
Identity = 95/127 (74.80%), Postives = 112/127 (88.19%), Query Frame = 1
Query:   79 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            D+CKLKFLELK KR +RFI+F+I+ +Q  V+VEKLG P +TY+DF ASLPA+ECRYAV+D+DF T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:    2 DNCKLKFLELK-KRIFRFIIFRIDGQQ--VVVEKLGNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.030e-49
Identity = 85/137 (62.04%), Postives = 120/137 (87.59%), Query Frame = 1
Query:   52 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            NA+SGM V D  K  FLELK K+ +R+++FKI+EK+K+V+VEK G P +++++FAA+LP  +CRYAVYD+DFVT+ENCQKS+IFFIAWSPD++R+R+KM+YA+SK+RF+RELDG+  E+QATDP+EM L+V ++RA+
Sbjct:    7 NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.528e-48
Identity = 85/137 (62.04%), Postives = 116/137 (84.67%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 456
            MAN++SG+A+HDDCKLKF EL++KR +RFI F ++ K K++IV+K+G+ T +YEDF +SLP  +CR+A+YD+DF+TAE+  KSRIF+I WSPD A+VRSKM+YASS +RFK+EL+GIQ+E+QATD  E+ LD  KDR
Sbjct:    1 MANSSSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
The following BLAST results are available for this feature:
BLAST of DC900252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ADF_LILLO1.187e-5775.36Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF7_ARATH1.187e-5776.81Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF6_ORYSJ1.187e-5774.64Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF12_ARATH1.451e-5576.09Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF9_ORYSJ3.575e-5470.50Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF2_MAIZE7.963e-5468.35Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF1_MAIZE3.952e-5367.63Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF_BRANA5.342e-5074.80Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF_VITVI2.030e-4962.04Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF4_ORYSJ8.528e-4862.04Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionDC900252 VSS Citrus sinensis cDNA clone VS28291 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900252 ID=DC900252; Name=DC900252; organism=Citrus sinensis; type=EST; length=815bp
AAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAAACCATGGC
TAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCTAAAGTTCT
TGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTAAGATTGAG
GAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCAACTCAAAC
CTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGTGCCGATATGCTG
TGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAAGCAGGATT
TTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGATGAT
TTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATTCAAG
TGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATTTAAA
GACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGAGATTGTTT
TTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTTGTGGCGGC
AGCTTGAATCTAACTGAATTATGATATTGGTTTGTTGTTCAAGTTTCACC
GATGCAGTATTCTCGTCTAGAACCATTTCAGTGGTCTTTATGATGTCTTT
ATTGATTTGTTGTGGTGTGGAAGTTATGGGATGAGTGGCTACTTATAGCT
ATTTCGTCAAGCTAAGGTGTTTCAATTGATGGGGGATGGATAACCCTCTG
TTAGGGTTGTTTTTACTTTGAAAATGGATGTTTCATTTTGAACTTTATAA
ATGGATGTTTCATTT
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