DC900252

Overview
NameDC900252
Unique NameDC900252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:160..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.232e-47
Identity = 83/137 (60.58%), Postives = 114/137 (83.21%), Query Frame = 1
Query:   52 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            NA SGM V D+ K  FLEL+ K+T+R++VFKI+E +K+V+VEK G PT++Y+DF ASLP  +CRYAVYD+DFVT+ENCQKS+IFF AWSP T+ +R+K++Y++SKD+  REL GI  E+QATDP+E+ L+V ++RAN
Sbjct:   10 NAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.232e-47
Identity = 84/142 (59.15%), Postives = 117/142 (82.39%), Query Frame = 1
Query:   37 LETMANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            + + +NA+SGM V  D +  FLEL+ K+ +R+++FKIEEKQKQV+VEK G  T++Y+DF ASLP  +CRYA+YD+DFVT EN QKS+IFFIAWSP T+R+R+KM+Y++SKDR K+ELDG   E+QATDP+E+ L+V ++RA+
Sbjct:    4 MRSHSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.231e-46
Identity = 78/142 (54.93%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   37 LETMANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            + + ANA+SG+ V  +CK  FLEL+ K+++R+++FKI++K K+V+VEK G  T++++DF  SLP  +CRYA+YD+DFVT ENCQKS+IFF+AWSP  +R+R+KM+YA+SK+RF+RELDG+  E+QATDPSE+ +++ ++RA+
Sbjct:    4 VRSRANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.033e-45
Identity = 84/138 (60.87%), Postives = 114/138 (82.61%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            MANA SG+AV+D+C LKF EL++KR +RFI FK+++K K+++V+++G+   +Y+DF  SLP  +CRYA+YD+DFVTAE+ QKSRIF+I WSP +A+V+SKM+YASS  +FK  L+GIQVELQATD SE+ LD  KDRA
Sbjct:    1 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.354e-42
Identity = 74/135 (54.81%), Postives = 108/135 (80.00%), Query Frame = 1
Query:   55 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            A +GM V D+C   F+++K K+ +R+IVFKIEEK ++V V+K+G   ++Y D   SLP ++CRYAV+D+DFVT +NC+KS+IFFIAWSP+ +++R+K++YA+SKD  +R L+GI  ELQATDP+EMG D+ +DRA
Sbjct:    8 ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.319e-40
Identity = 72/135 (53.33%), Postives = 106/135 (78.52%), Query Frame = 1
Query:   55 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            A  GM V ++C+  F+E+K K+ +RF+V+KI+E+ + V+V+K+G P + YE+  A+LP ++CRYAV+D+DFVT +NCQKS+IFFIAWSP  +R+R+K++YA+SK   +R LDG+  E+QATD SEMG DV + RA
Sbjct:    8 ATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.722e-40
Identity = 70/127 (55.12%), Postives = 102/127 (80.31%), Query Frame = 1
Query:   79 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            DDCK  F+E+K K+ +R++V+K+EEK ++V V+K+G   ++Y+D AASLP ++CRYAV+D+D+VT +NC+ S+IFFI WSP+ +R+R KM+YA+SK   +R LDG+  ELQATDP+EMG D  +DRA
Sbjct:    3 DDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.458e-39
Identity = 76/150 (50.67%), Postives = 109/150 (72.67%), Query Frame = 1
Query:   46 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE-----------NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            MANA SG+AV ++CK +F EL+A R +RF+VFKI++  +QV+V+++G     +++  ASLPA+ CRYAVYD+DF  ++              +S+IFF++WSP  A VRSKM+YASS + FK+ELDG+Q++LQATDPSE+ LDV KD  +
Sbjct:    1 MANATSGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.904e-39
Identity = 68/130 (52.31%), Postives = 105/130 (80.77%), Query Frame = 1
Query:   73 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            V +  K  F ELK ++ +R+++FKI++++++++VEK G P ++Y+DF ASLPA++CRYAVYD DFV+ +NC+KS+IFFI+WSP  +R+R+K IYA S+++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.040e-37
Identity = 82/138 (59.42%), Postives = 101/138 (73.19%), Query Frame = 1
Query:   67 MAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKL------GEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            M +HDDCKL FLELK +RT+R IV+KIE+   QVIVEK       GE  Q+YE+FA SLPA+ECRYA+ D +FV  E     +I FIAWSP TA++R KMIY+S+KDRFKRELDGIQVE  ATD +++ LD  + R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNM-QVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
The following BLAST results are available for this feature:
BLAST of DC900252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ADF6_ARATH4.232e-4760.58Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF2_ORYSJ4.232e-4759.15Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF11_ORYSJ1.231e-4654.93Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF3_MAIZE3.033e-4560.87Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF5_ARATH5.354e-4254.81Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF5_ORYSJ1.319e-4053.33Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF9_ARATH1.722e-4055.12Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF3_ORYSJ1.458e-3950.67Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]
ADF10_ORYSJ1.904e-3952.31Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF11_ARATH3.040e-3759.42Putative actin-depolymerizing factor 11 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionDC900252 VSS Citrus sinensis cDNA clone VS28291 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900252 ID=DC900252; Name=DC900252; organism=Citrus sinensis; type=EST; length=815bp
AAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAAACCATGGC
TAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCTAAAGTTCT
TGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTAAGATTGAG
GAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCAACTCAAAC
CTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGTGCCGATATGCTG
TGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAAGCAGGATT
TTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGATGAT
TTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATTCAAG
TGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATTTAAA
GACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGAGATTGTTT
TTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTTGTGGCGGC
AGCTTGAATCTAACTGAATTATGATATTGGTTTGTTGTTCAAGTTTCACC
GATGCAGTATTCTCGTCTAGAACCATTTCAGTGGTCTTTATGATGTCTTT
ATTGATTTGTTGTGGTGTGGAAGTTATGGGATGAGTGGCTACTTATAGCT
ATTTCGTCAAGCTAAGGTGTTTCAATTGATGGGGGATGGATAACCCTCTG
TTAGGGTTGTTTTTACTTTGAAAATGGATGTTTCATTTTGAACTTTATAA
ATGGATGTTTCATTT
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