DC900252

Overview
NameDC900252
Unique NameDC900252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:160..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.726e-32
Identity = 62/130 (47.69%), Postives = 98/130 (75.38%), Query Frame = 1
Query:   73 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            V +  K  F EL  ++ +R+++FKI++++++++VEK G P ++Y+DF ASLPA+    AVYD DFV+ +NC+KS+IFFI+WSP  + +R+K IYA  +++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.023e-32
Identity = 64/133 (48.12%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            SG+AV DDC  KF ELK    +R++ FK+     +V+VE +G P  TYEDF + LP  +CRYA++DY+F   +  Q+++I FI W+PD+A ++SKM+Y S+KD  K++L GIQVE+QATD +E+  D   +RA
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.118e-26
Identity = 59/135 (43.70%), Postives = 89/135 (65.93%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            SG+AV+D     F ELK  +   FI++KI + + +++VE+ G  T +Y+ F   LP  +CRYAVYD+++ +++   ++S++ F  WSPDTA VRSKMIYASSKD  +R L GI  E+Q TD SE+  +   +R +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEGT-TDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.198e-25
Identity = 51/135 (37.78%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            +SG+ V  +C  KF ELK  +  ++I++ + +K  +++V+     T +Y+DF A LP  ECRYA+YD+++   +  ++++I F +WSPD A+++ KM++ASSKD  ++ L GI  E+Q TD SE+  D   D+ +
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTSTST-SYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.951e-24
Identity = 53/135 (39.26%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            SG+AV D+    F +LK  + Y+FI+F + +++ +++VE+    +  Y+ F   LP  EC+YA+YD+++ +     ++S+I F  WSPDTA ++SKMIYASSKD  +R L+G+  ++Q TD SE+  +   DR +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.465e-23
Identity = 55/135 (40.74%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            SG++V D+    F +LK  + Y+F+++ I E  K  IV K    +Q+Y++F   LP  +C YA+YD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L G+  ++Q TD SE+  +   +R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISE-DKTTIVVKETSTSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.913e-23
Identity = 51/132 (38.64%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 456
            SG+ V  +C   F ELK  ++ R++VFK+ + + +++VEK     + ++ F   LP ++CRYA+YD++F   E   +++I FI+WSPD A ++SKM+Y+SSKD  +R   GI  ++QATD SE+  +   ++
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTD-KDFDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.499e-23
Identity = 52/135 (38.52%), Postives = 86/135 (63.70%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            SG+AV D+    F +LK  + Y+FI+F + + + +++V++      +Y+ F   LP  +C YA+YD+++ +     ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  D   +R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.263e-23
Identity = 52/135 (38.52%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 462
            SG+AV D+    F +LK    Y+F++F + + + +++V++      +Y+ F   LP  +C YAVYD+++  +E+  ++S+I F  WSPDTA VR KM+YASSKD  KR L+G+ +E+Q TD SE+  +   ++ +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.270e-23
Identity = 53/128 (41.41%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 441
            SG+AV D+    F +LK  + Y+FI++ + + + ++IV++     Q Y+ F   LP  +C YAVYD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
The following BLAST results are available for this feature:
BLAST of DC900252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ADF8_ORYSJ1.726e-3247.69Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ACTP_ACACA5.023e-3248.12Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI4.118e-2643.70Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_USTMA1.198e-2537.78Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_DEBHA2.951e-2439.26Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO1.465e-2340.74Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_SCHPO1.913e-2338.64Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_YEAST2.499e-2338.52Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_CANGA3.263e-2338.52Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_KLULA7.270e-2341.41Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900252 VSS Citrus sinensis cDNA clone VS28291 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900252 ID=DC900252; Name=DC900252; organism=Citrus sinensis; type=EST; length=815bp
AAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAAACCATGGC
TAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCTAAAGTTCT
TGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTAAGATTGAG
GAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCAACTCAAAC
CTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGTGCCGATATGCTG
TGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAAGCAGGATT
TTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGATGAT
TTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATTCAAG
TGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATTTAAA
GACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGAGATTGTTT
TTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTTGTGGCGGC
AGCTTGAATCTAACTGAATTATGATATTGGTTTGTTGTTCAAGTTTCACC
GATGCAGTATTCTCGTCTAGAACCATTTCAGTGGTCTTTATGATGTCTTT
ATTGATTTGTTGTGGTGTGGAAGTTATGGGATGAGTGGCTACTTATAGCT
ATTTCGTCAAGCTAAGGTGTTTCAATTGATGGGGGATGGATAACCCTCTG
TTAGGGTTGTTTTTACTTTGAAAATGGATGTTTCATTTTGAACTTTATAA
ATGGATGTTTCATTT
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