DC900252

Overview
NameDC900252
Unique NameDC900252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:160..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 414
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF2_XENTR (Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.864e-16
Identity = 55/151 (36.42%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK--------LGEPT-QTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 456
            ASG+ V+D+    F E+K          K+  + ++F +   +K++IVE+        +GE     Y  F   LP ++CRY +YD  + T E+ +K  + FI W+PD A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVPDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.124e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 432
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.124e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 432
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.124e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGE---------PTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 432
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEVKKRKKAVIFCLSPDKKCIIVEEGKEILVGDVGVTVTDPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.124e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 432
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 432
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 432
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGATITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 411
            ASG+ V DD    F E+K         AK+  + +VF + + +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  K+ L GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNEMKVRHQLSPEDAKKRKKAVVFCLSDDKKTIILEPGKEILQGDIGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.769e-14
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 411
            ASG+ V DD    F ++K         AK+  + +VF + E +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  K+   GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNDMKVRHQLSPEEAKKRKKAVVFCLSEDKKMIILEPGKEILQGDVGCNVDDPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of DC900252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
COF1_BOVIN2.265e-1638.69Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COF2_XENTR3.864e-1636.42Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1[more]
DEST_PIG1.124e-1534.27Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN1.124e-1534.27Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_CHICK1.124e-1534.27Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]
DEST_BOVIN1.124e-1534.27Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT1.918e-1533.57Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
DEST_MOUSE1.918e-1533.57Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
COF1A_XENLA9.517e-1537.50Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF1_XENTR2.769e-1436.76Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC900252 VSS Citrus sinensis cDNA clone VS28291 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900252 ID=DC900252; Name=DC900252; organism=Citrus sinensis; type=EST; length=815bp
AAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAAACCATGGC
TAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCTAAAGTTCT
TGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTAAGATTGAG
GAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCAACTCAAAC
CTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGTGCCGATATGCTG
TGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAAGCAGGATT
TTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGATGAT
TTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATTCAAG
TGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATTTAAA
GACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGAGATTGTTT
TTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTTGTGGCGGC
AGCTTGAATCTAACTGAATTATGATATTGGTTTGTTGTTCAAGTTTCACC
GATGCAGTATTCTCGTCTAGAACCATTTCAGTGGTCTTTATGATGTCTTT
ATTGATTTGTTGTGGTGTGGAAGTTATGGGATGAGTGGCTACTTATAGCT
ATTTCGTCAAGCTAAGGTGTTTCAATTGATGGGGGATGGATAACCCTCTG
TTAGGGTTGTTTTTACTTTGAAAATGGATGTTTCATTTTGAACTTTATAA
ATGGATGTTTCATTT
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