DC900244

Overview
NameDC900244
Unique NameDC900244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900244 vs. ExPASy Swiss-Prot
Match: S35E1_HUMAN (Solute carrier family 35 member E1 OS=Homo sapiens GN=SLC35E1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.545e-23
Identity = 63/179 (35.20%), Postives = 105/179 (58.66%), Query Frame = 1
Query:   25 NMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSL----IAAICYHAYQQVSYMILQRVSPVTHSVGNCVKR 549
            ++S+ KV VS+ HT+KAT P + VLLS + + E  +  V  SLIPI+ GV LA+VTE+SF+  G  SA+A+ L    +N+ SKKV+  ++  + ++ L +I+   +   MIP  ++++      A+L S+ L     +  +L    ++  C  A   +++ IL  VSP+++SV N  KR
Sbjct:  127 HVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLIPIISGVLLATVTELSFDMWGLVSALAATLCFSLQNIFSKKVL--RDSRIHHLRLLNILGCHAVFFMIPTWVLVD----LSAFLVSSDLTYVYQWPWTLLLLAVSGFCNFAQNVIAFSILNLVSPLSYSVANATKR 299          

HSP 2 Score: 29.6462 bits (65), Expect = 2.545e-23
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  575 MFFRTPVSAINAFGTGIALAGVFLYSRVK 661
            +  R PV++ N  G   A+ GVFLY++ K
Sbjct:  308 IMLRNPVTSTNVLGMMTAILGVFLYNKTK 336          
BLAST of DC900244 vs. ExPASy Swiss-Prot
Match: S35E1_RAT (Solute carrier family 35 member E1 OS=Rattus norvegicus GN=Slc35e1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.296e-23
Identity = 58/175 (33.14%), Postives = 102/175 (58.29%), Query Frame = 1
Query:   25 NMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKR 549
            ++S+ KV VS+ HT+KAT P + VLLS + + E  +  V  SL+PI+ GV LA+VTE+SF+  G  SA+A+ L    +N+ SKKV+  ++  + ++ L +I+   +   MIP  ++++  TF  +   +         +  +++  C  A   +++ IL  +SP+++SV N  KR
Sbjct:  127 HVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVL--RDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSTFLVSSDLAYVSQWPWTLLLLVVSGFCNFAQNVIAFSILNLISPLSYSVANATKR 299          

HSP 2 Score: 29.6462 bits (65), Expect = 7.296e-23
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  575 MFFRTPVSAINAFGTGIALAGVFLYSRVK 661
            +  R PV++ N  G   A+ GVFLY++ K
Sbjct:  308 IMLRNPVTSTNVLGMMTAILGVFLYNKTK 336          
BLAST of DC900244 vs. ExPASy Swiss-Prot
Match: S35E1_MOUSE (Solute carrier family 35 member E1 OS=Mus musculus GN=Slc35e1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.296e-23
Identity = 62/179 (34.64%), Postives = 105/179 (58.66%), Query Frame = 1
Query:   25 NMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSL----IAAICYHAYQQVSYMILQRVSPVTHSVGNCVKR 549
            ++S+ KV VS+ HT+KAT P + VLLS + + E  +  V  SL+PI+ GV LA+VTE+SF+  G  SA+A+ L    +N+ SKKV+  ++  + ++ L +I+   +   MIP  ++++  TF    L S+ L     +  +L    ++  C  A   +++ IL  +SP+++SV N  KR
Sbjct:  127 HVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVL--RDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSTF----LVSSDLAYVSQWPWTLLLLAVSGFCNFAQNVIAFSILNLISPLSYSVANATKR 299          

HSP 2 Score: 29.6462 bits (65), Expect = 7.296e-23
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  575 MFFRTPVSAINAFGTGIALAGVFLYSRVK 661
            +  R PV++ N  G   A+ GVFLY++ K
Sbjct:  308 IMLRNPVTSTNVLGMMTAILGVFLYNKTK 336          
BLAST of DC900244 vs. ExPASy Swiss-Prot
Match: S35E1_DROME (Solute carrier family 35 member E1 homolog OS=Drosophila melanogaster GN=CG14621 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.614e-22
Identity = 60/182 (32.97%), Postives = 106/182 (58.24%), Query Frame = 1
Query:    7 LGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQ-VSYMILQRVSPVTHSVGNCVKR 549
            L ++ +++SL KV VS+ HT+KAT P F+V+L+ +F GE     V  SL+PI+ GV +A+VTE+SF+  G  SA+ S +    +N+ SKKV+  K+  + ++ L  ++  +S  + +P+ L M+       +  +A  NL    +  L A    +  Q  +++ +L  V+P+T++V +  KR
Sbjct:   90 LASVTSHISLWKVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATVTEISFDMMGLISALISTMGFSMQNIFSKKVL--KDTNIHHLRLLHLLGKLSLFIFLPLWLYMDSFA---VFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKR 266          

HSP 2 Score: 26.9498 bits (58), Expect = 4.614e-22
Identity = 10/26 (38.46%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  590 PVSAINAFGTGIALAGVFLYSRVKRI 667
            PV+ +N  G  +A+ GV  Y+R K++
Sbjct:  280 PVTWVNCVGMTLAIVGVLCYNRAKQL 305          
BLAST of DC900244 vs. ExPASy Swiss-Prot
Match: S35E2_HUMAN (Solute carrier family 35 member E2 OS=Homo sapiens GN=SLC35E2 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.448e-21
Identity = 59/173 (34.10%), Postives = 99/173 (57.23%), Query Frame = 1
Query:   28 MSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVK 546
            +SL  VAVSF  T+K++ P F+V++S M LGE+  L V  SLIP+MGG+AL + TE+SFN  GF +A+++N+ +  +NV SKK++   +       L    +  +  +++P  +    V       +S   N ++V +  L   + +H     +Y ++ ++SPVT SV + VK
Sbjct:  162 VSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVAMLVPARVFFTDVPVIGRSGKSFSYN-QDVVLLLLTDGVLFHLQSVTAYALMGKISPVTFSVASTVK 333          
BLAST of DC900244 vs. ExPASy Swiss-Prot
Match: S35E2_MOUSE (Solute carrier family 35 member E2 OS=Mus musculus GN=Slc35e2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.566e-20
Identity = 58/173 (33.53%), Postives = 97/173 (56.07%), Query Frame = 1
Query:   28 MSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVK 546
            +SL  VAVSF  T+K++ P F+V++S M LGE+  L V  SLIP+MGG+AL + TE+SFN  GF +A+++N+ +  +NV SKK++   +       L    +  +  L+IP       +       +S   + +++ +  L     +H     +Y ++ ++SPVT SV + VK
Sbjct:  162 VSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVALLIPAWTFFMDIPVIGRSGKSFSYS-QDIVLLLLTDGALFHLQSVTAYALMGKISPVTFSVASTVK 333          
BLAST of DC900244 vs. ExPASy Swiss-Prot
Match: YG1B_SCHPO (Putative transporter C83.11 OS=Schizosaccharomyces pombe GN=SPBC83.11 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.407e-13
Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   10 GNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMV-------NKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKR 549
            G++F +++  K+ VS  HT+KA  P F+VL          +     SL+P+  GV LA   E+S +  G   A+ S     S+N+   K+ +       + ++  + + L    + ++FI+MIPV L  EG     AYL   G     V++  +   + +     +++ +L  +SPV +S+ + +KR
Sbjct:   83 GHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWLYQEGF----AYLPEVG---SPVFLNLIYNGLSHFFQNILAFTLLSIISPVAYSIASLIKR 262          
The following BLAST results are available for this feature:
BLAST of DC900244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
S35E1_HUMAN2.545e-2335.20Solute carrier family 35 member E1 OS=Homo sapiens... [more]
S35E1_RAT7.296e-2333.14Solute carrier family 35 member E1 OS=Rattus norve... [more]
S35E1_MOUSE7.296e-2334.64Solute carrier family 35 member E1 OS=Mus musculus... [more]
S35E1_DROME4.614e-2232.97Solute carrier family 35 member E1 homolog OS=Dros... [more]
S35E2_HUMAN1.448e-2134.10Solute carrier family 35 member E2 OS=Homo sapiens... [more]
S35E2_MOUSE3.566e-2033.53Solute carrier family 35 member E2 OS=Mus musculus... [more]
YG1B_SCHPO9.407e-1326.74Putative transporter C83.11 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionDC900244 VSS Citrus sinensis cDNA clone VS28284 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900244 ID=DC900244; Name=DC900244; organism=Citrus sinensis; type=EST; length=1002bp
CACACATTGGGTAACCTCTTTACTAATATGAGTCTTGGGAAAGTGGCTGT
TTCATTCACTCACACGATTAAGGCTACGGAGCCATTCTTCTCTGTTCTCC
TATCTGCTATGTTTCTAGGGGAGTTCCCCACTCTCTGGGTTGTTGGATCT
CTAATACCTATTATGGGTGGTGTTGCGCTTGCATCAGTTACTGAGGTTTC
TTTTAATTGGGCTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAACC
AATCTCGTAATGTCCTTAGCAAAAAAGTCATGGTGAATAAAGAGGAAGCT
TTGGACAATATCACCCTATTTTCTATAATAACAGTCATGTCTTTCATCCT
GATGATCCCCGTGACTCTCATTATGGAAGGTGTCACATTTACCCCTGCAT
ACCTACAGTCTGCTGGTTTGAATCTTAAAGAGGTTTATGTAAGGTCACTT
ATCGCTGCAATCTGTTACCATGCTTATCAGCAGGTCTCTTACATGATATT
ACAGAGGGTAAGCCCTGTTACCCATTCAGTAGGCAATTGTGTGAAGAGGG
GTGGTGGTCATCGTGAGCTCTGTTATGTTCTTCCGAACTCCAGTCTCAGC
TATCAATGCCTTTGGCACTGGGATCGCTCTTGCTGGAGTTTTCCTGTACT
CAAGGGTGAAGCGCATTAAGCCAAAGGCAAAGACTGCTTAAATTTCTTGT
GGAGAATTTTTTTTCCAGGCAATTGGGTTGTTAGTTGATAAAATTTAAGT
TGTTCATTGAGAACTTATTTTTAGGTCAGGGCAGGAACTTAATTTTTATT
TTGGGTTTGTAATCTCTTTTCTTTTTTGTTTCTCTCTTNATCTTTCTTTT
GAGATGATACATTCTTTTGTGGATTTCGCCNCAGTTATGCCGGTAGCAAA
TCAGCTGCTCTGAATTGTATCTTGTCCTTTTTGTTTAAGCCCCAATGTTT
CATCTCCCATCGGCAGTTCCTCGTTTGAATGTGAAATGTAATTTTGCTCT
TT
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