DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5343 contig Csv1_Contig5343:486..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RICBR (Uroporphyrinogen decarboxylase OS=Rickettsia bellii (strain RML369-C) GN=hemE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.811e-24
Identity = 65/218 (29.82%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  118 LREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLER-LALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 768
            +R+E+    +++GF G+P+T+ +Y++EG   + F   K+  +    +   LL   T     ++  Q  +GA  ++IFDSWA  L   +F++F +   K+I+ ++K   PD+ +I +  G+G L E+ L     D++++D  + + E  +     V VQGN+DP  L  +K  I  +I+  +        I NLGHGI   TP ENV    +  +   Y
Sbjct:  123 VRKELPKSTSLIGFAGSPWTVMTYMLEGKGKQDFRVSKKFIYENKDLAKELLNFITEKTIHHLINQIKSGANIIKIFDSWAGILPEEEFKKFVIEPTKKIIKSIKGYFPDIPIITFPKGAGLLYEKFLEEVPTDIIAIDPLIPL-EKMKLWSNKVTVQGNLDPVILLTNKKIIKEKIHKILSIMENKNFIFNLGHGILPETPPENVEFLVKCIREYEY 339          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RICB8 (Uroporphyrinogen decarboxylase OS=Rickettsia bellii (strain OSU 85-389) GN=hemE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.811e-24
Identity = 65/218 (29.82%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  118 LREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLER-LALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 768
            +R+E+    +++GF G+P+T+ +Y++EG   + F   K+  +    +   LL   T     ++  Q  +GA  ++IFDSWA  L   +F++F +   K+I+ ++K   PD+ +I +  G+G L E+ L     D++++D  + + E  +     V VQGN+DP  L  +K  I  +I+  +        I NLGHGI   TP ENV    +  +   Y
Sbjct:  123 VRKELPKSTSLIGFAGSPWTVMTYMLEGKGKQDFRVSKKFIYENKDLAKELLNFITEKTIHHLINQIKSGANIIKIFDSWAGILPEEEFKKFVIEPTKKIIKSIKGYFPDIPIITFPKGAGLLYEKFLEEVPTDIIAIDPLIPL-EKMKLWSNKVTVQGNLDPVILLTNKKIIKEKIHKILSIMENKNFIFNLGHGILPETPPENVEFLVKCIREYEY 339          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_CAUCR (Uroporphyrinogen decarboxylase OS=Caulobacter crescentus GN=hemE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.366e-24
Identity = 74/248 (29.84%), Postives = 133/248 (53.63%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL-TGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP + D  + ++  ++  E    +++  VG+ LT +R  ++ + A++GF GAP+T+A+Y++E GSS   S  +  A+  P+ L AL++    +   Y+  Q D GAQA+++F+SWA  LS   F+        +I++ ++     + +I +  G+G L+E  A  T V  V+LD +     G + +     +QG +DP  L    D +  R+++ + +  +  +I NLGHGI   TP  +V    E
Sbjct:   99 GEGPKLGDMPSVESMAEKAGEAG--KALSLVGETLTRVRSALDPDKALIGFAGAPWTVATYMIEKGSSDR-SGARTFAYQNPETLDALIQVLVDATIDYLAMQVDAGAQALKLFESWAEGLSEPLFDRLVTQPHIRIIEGLRARGVTVPIIGFPRGAGTLVEDYAARTPVQGVALDTSASAKLG-QTIQKTKTIQGALDPLLLRAGGDALLKRVDEMLEQWNQGPYIFNLGHGILPDTPIAHVEAVLE 342          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_CAUCN (Uroporphyrinogen decarboxylase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=hemE PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.366e-24
Identity = 74/248 (29.84%), Postives = 133/248 (53.63%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL-TGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP + D  + ++  ++  E    +++  VG+ LT +R  ++ + A++GF GAP+T+A+Y++E GSS   S  +  A+  P+ L AL++    +   Y+  Q D GAQA+++F+SWA  LS   F+        +I++ ++     + +I +  G+G L+E  A  T V  V+LD +     G + +     +QG +DP  L    D +  R+++ + +  +  +I NLGHGI   TP  +V    E
Sbjct:   99 GEGPKLGDMPSVESMAEKAGEAG--KALSLVGETLTRVRSALDPDKALIGFAGAPWTVATYMIEKGSSDR-SGARTFAYQNPETLDALIQVLVDATIDYLAMQVDAGAQALKLFESWAEGLSEPLFDRLVTQPHIRIIEGLRARGVTVPIIGFPRGAGTLVEDYAARTPVQGVALDTSASAKLG-QTIQKTKTIQGALDPLLLRAGGDALLKRVDEMLEQWNQGPYIFNLGHGILPDTPIAHVEAVLE 342          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RHOSK (Uroporphyrinogen decarboxylase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=hemE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 70/235 (29.79%), Postives = 110/235 (46.81%), Query Frame = 1
Query:   73 DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-GLLERLALTGVDVVSLD------WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 756
            D  E++  V +   IL  E+  E   +GF G P+T+A+Y++ G  SK  +   +L  +      AL+ + T +  +Y+  Q + G + V++FDSWA  L   DFE+F++   K+IV  +K   P L +I +   +G G +     TG D V++D      W  +  +  R       VQGN+DP  +    + +       V       HI NLGHGI      ENV    E  +
Sbjct:  112 DIHETLAPVYETCRILARELPKETTFIGFAGMPWTVATYMIAGRGSKDQAAAHKLKDTDRPAFEALMDRVTEATIEYLAKQVEAGCEVVKLFDSWAGSLKGQDFEDFAVAPAKRIVSELKARFPGLPVIAFPREAGEGYIGFAEKTGADCVAIDNSVSPEWAAEKVQAGR-----TCVQGNLDPKYMVTGGEELVQATKRVVEAFRNGPHIFNLGHGITPEADPENVTLLVETIR 341          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RHOS1 (Uroporphyrinogen decarboxylase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=hemE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 70/235 (29.79%), Postives = 110/235 (46.81%), Query Frame = 1
Query:   73 DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-GLLERLALTGVDVVSLD------WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 756
            D  E++  V +   IL  E+  E   +GF G P+T+A+Y++ G  SK  +   +L  +      AL+ + T +  +Y+  Q + G + V++FDSWA  L   DFE+F++   K+IV  +K   P L +I +   +G G +     TG D V++D      W  +  +  R       VQGN+DP  +    + +       V       HI NLGHGI      ENV    E  +
Sbjct:  112 DIHETLAPVYETCRILARELPKETTFIGFAGMPWTVATYMIAGRGSKDQAAAHKLKDTDRPAFEALMDRVTEATIEYLAKQVEAGCEVVKLFDSWAGSLKGQDFEDFAVAPAKRIVSELKARFPGLPVIAFPREAGEGYIGFAEKTGADCVAIDNSVSPEWAAEKVQAGR-----TCVQGNLDPKYMVTGGEELVQATKRVVEAFRNGPHIFNLGHGITPEADPENVTLLVETIR 341          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_CHLMU (Uroporphyrinogen decarboxylase OS=Chlamydia muridarum GN=hemE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 73/222 (32.88%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   73 DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ-THPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKH-ILNLGHGIKVGTPEENV 732
            DP  +  ++ +A+  L + +     ++ F  +PFTLASY++EGG+SK  SK     +  P    ALL +     A Y+Q Q   GA AVQ+F+S +  L P  F ++ +    +++  +KQ  +P +SL         L   L  TG D +  D+ V+++E  R+LG   ++QGN DP  L   +D +   +   +    +  H I NLGHGI   TP ENV
Sbjct:  104 DPFSTFSFLIEAIQKLTKRLT--VPLIAFAASPFTLASYLIEGGASKDCSKTIAFLYQYPDKFEALLNEIIKGTAIYLQLQVQAGASAVQLFESSSLRLPPSLFSKYVVSPNAKLIRLIKQRENPPVSLFCRCFYQEFL--SLYATGADTLHPDYHVELSEIYRQLGDPGSIQGNFDPALLLLPQDLLIAHLETYLAPLKQQSHYIFNLGHGILPQTPLENV 321          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_PHEZH (Uroporphyrinogen decarboxylase OS=Phenylobacterium zucineum (strain HLK1) GN=hemE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 80/245 (32.65%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV--VSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVA 735
            G+GP + +    +A  DQV       S   VG+ L  +R E+  + A++GF GAP+T+A+Y++E   S+     +  A++ P  L ALL     + A+Y+  QA  GAQA+++F+SWA  LS   FE   +     IV+ V+     + +I +  G+G  +E  A  GV V  ++LD     A GRR       +QG +D   L      +  R++  + + G    I NLGHG+   TP EN+A
Sbjct:   93 GEGPKLGELPPIEALRDQVEASTGRLSA--VGETLARVRAELEPDRALIGFAGAPWTVATYMLERKGSER-EAARAYAYAHPDELDALLDVLVDATARYLVMQAKAGAQALKLFESWAESLSEDVFERIVVRPHAAIVEKVRAAGVTVPIIGFPRGAGAQVETYA-EGVPVEGIALDVQATAALGRRLQAQGRCIQGALDNLLLREGGPALDARVDQLLAQWGDGPWIFNLGHGVLPDTPIENIA 333          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RHOS4 (Uroporphyrinogen decarboxylase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=hemE PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.610e-23
Identity = 69/235 (29.36%), Postives = 109/235 (46.38%), Query Frame = 1
Query:   73 DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-GLLERLALTGVDVVSLD------WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 756
            D  E++  V +   IL  E+  E   +GF G P+T+A+Y++ G  SK  +   +L  +      AL+ + T +  +Y+  Q + G + V++FDSWA  L   DFE+F++   K+IV  +K     L +I +   +G G +     TG D V++D      W  +  +  R       VQGN+DP  +    + +       V       HI NLGHGI      ENV    E  +
Sbjct:  112 DIHETLAPVYETCRILARELPKETTFIGFAGMPWTVATYMIAGRGSKDQAAAHKLKDTDRPAFEALMDRVTEATIEYLAKQVEAGCEVVKLFDSWAGSLKGQDFEDFAVAPAKRIVSELKARFQGLPVIAFPREAGEGYIGFAEKTGADCVAIDNSVSPEWAAEKVQAGR-----TCVQGNLDPKYMVTGGEELVQATKRVVEAFRNGPHIFNLGHGITPEADPENVTLLVETIR 341          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RICPR (Uroporphyrinogen decarboxylase OS=Rickettsia prowazekii GN=hemE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.695e-22
Identity = 65/226 (28.76%), Postives = 115/226 (50.88%), Query Frame = 1
Query:   58 QVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLER-LALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENV 732
            Q  + D    +  V K +  ++E++ +  +++GF G+P+T+ SY++EG   + F   K+  +    +   LL   T   + Y+  Q  +G   ++IFDSW+  L+  DF EF +   K+I+  VK+      +I +  G+G L E+ +    +D++++D  V + E  +     V +QGN+DP  L  +K+ I  +    ++       I NLGHGI   T  ENV
Sbjct:  102 QYLQRDSNNKLEKVYKIIKKVKEKLPSNTSLIGFAGSPWTVMSYMLEGKGKRDFRTSKKFIYENKILAKDLLNFITEKTSDYLINQVKSGVDLLKIFDSWSGVLAEDDFTEFVIEPTKKIILKVKEVFVKTPIITFPKGAGLLYEKFIEEVPIDILAVDQMVPL-EKMKEWSNKVIIQGNLDPVILLTNKEIIKEKTYKILQAMKGKNFIFNLGHGILPETHPENV 326          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_RICBR1.811e-2429.82Uroporphyrinogen decarboxylase OS=Rickettsia belli... [more]
DCUP_RICB81.811e-2429.82Uroporphyrinogen decarboxylase OS=Rickettsia belli... [more]
DCUP_CAUCR2.366e-2429.84Uroporphyrinogen decarboxylase OS=Caulobacter cres... [more]
DCUP_CAUCN2.366e-2429.84Uroporphyrinogen decarboxylase OS=Caulobacter cres... [more]
DCUP_RHOSK8.990e-2429.79Uroporphyrinogen decarboxylase OS=Rhodobacter spha... [more]
DCUP_RHOS18.990e-2429.79Uroporphyrinogen decarboxylase OS=Rhodobacter spha... [more]
DCUP_CHLMU3.416e-2332.88Uroporphyrinogen decarboxylase OS=Chlamydia murida... [more]
DCUP_PHEZH4.462e-2332.65Uroporphyrinogen decarboxylase OS=Phenylobacterium... [more]
DCUP_RHOS47.610e-2329.36Uroporphyrinogen decarboxylase OS=Rhodobacter spha... [more]
DCUP_RICPR1.695e-2228.76Uroporphyrinogen decarboxylase OS=Rickettsia prowa... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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